SMTL ID : 2j78.1 (1 other biounit)

Beta-glucosidase from Thermotoga maritima in complex with gluco- hydroximolactam

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: E.88, E.91, K.133 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.88, A:E.91, H2O.7 CA.2: 3 residues within 4Å: Chain A: D.300, S.303, E.304 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.303, H2O.19, H2O.19, H2O.19, H2O.19

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: V.75, A.76, Y.432, Y.443 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.75, A:Y.443

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 2 residues within 4Å: Chain A: W.190, V.195 No protein-ligand interaction detected (PLIP)

1 x GOX: (2S,3S,4R,5R)-6-(HYDROXYAMINO)-2-(HYDROXYMETHYL)-2,3,4,5-TETRAHYDROPYRIDINE-3,4,5-TRIOL(Non-covalent)

GOX.5: 12 residues within 4Å: Chain A: Q.42, H.143, W.144, N.187, E.188, Y.317, W.346, E.373, W.420, E.427, W.428, F.436 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.42, A:H.143, A:N.187, A:E.188, A:E.188, A:N.315, A:W.428 Water bridges: A:N.425

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gloster, T.M. et al., Glycosidase Inhibition: An Assessment of the Binding of 18 Putative Transition-State Mimics. J.Am.Chem.Soc. (2007)

Release Date

2006-10-18

Peptides

BETA-GLUCOSIDASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-GLUCOSIDASE A

Related Entries With Identical Sequence