SMTL ID : 5n6t.2 (1 other biounit)

Thermotoga maritima family 1 glycoside hydrolase complexed with a cyclophellitol analogue transition state mimic

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: R.259, A.260, F.263, F.324, A.330, K.331, V.332 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.331 Water bridges: A:E.288, A:E.288 EDO.2: 6 residues within 4Å: Chain A: N.244, N.245, G.246, N.268, N.269, H.320 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.244, A:N.268, A:H.320 EDO.3: 2 residues within 4Å: Chain A: Y.199, P.329 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.199

1 x 8P2: [(1~{R},2~{R},3~{R},4~{S},5~{R},6~{S})-3,4,5-tris(oxidanyl)-7-oxabicyclo[4.1.0]heptan-2-yl]methanediazonium(Non-covalent)

8P2.4: 12 residues within 4Å: Chain A: Q.42, H.143, W.144, N.187, E.188, Y.317, W.346, E.373, W.420, E.427, W.428, F.436 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.42, A:Q.42, A:Q.42, A:H.143, A:N.187 Water bridges: A:N.425

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beenakker, T.J.M. et al., Carba-cyclophellitols Are Neutral Retaining-Glucosidase Inhibitors. J. Am. Chem. Soc. (2017)

Release Date

2017-03-01

Peptides

Beta-glucosidase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-glucosidase A

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