SMTL ID : 2vrj.1 (1 other biounit)

Beta-glucosidase from Thermotoga maritima in complex with N-octyl-5- deoxy-6-oxa-N-(thio)carbamoylcalystegine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x NCW: (1S,2R,3S,4R,5R)-2,3,4-trihydroxy-N-octyl-6-oxa-8-azabicyclo[3.2.1]octane-8-carbothioamide

NCW.1: 15 residues within 4Å: Chain A: Q.42, H.143, W.144, N.187, E.188, V.201, H.202, Y.317, M.344, E.373, W.420, E.427, W.428, A.429, E.430 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.201, A:E.427, A:W.428, A:A.429 Hydrogen bonds: A:Q.42, A:Q.42, A:H.143, A:N.187, A:E.427, A:E.427 Water bridges: A:N.425

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: H.62, D.74 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.62, A:D.74, H2O.3, H2O.4

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: V.75, A.76, Y.432, Y.443, Q.446 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.443 Hydrogen bonds: A:Y.443, A:Q.446 Water bridges: A:Y.432 ACT.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aguilar, M. et al., Molecular Basis for Beta-Glucosidase Inhibition by Ring-Modified Calystegine Analogues. Chembiochem (2008)

Release Date

2008-10-14

Peptides

BETA-GLUCOSIDASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-GLUCOSIDASE A

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