SMTL ID : 2yjb.1

CATHEPSIN L WITH A NITRILE INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x YJ9: (2S,4R)-4-(2-chlorophenyl)sulfonyl-N-[1-(iminomethyl)cyclopropyl]-1-[1-[4-(trifluoromethyl)phenyl]cyclopropyl]carbonyl-pyrrolidine-2-carboxamide(Covalent)

YJ9.1: 20 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, G.61, N.62, E.63, N.66, G.67, G.68, L.69, M.70, Y.72, A.135, M.161, D.162, H.163, G.164, A.214 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.69, A:A.135, A:A.214 Hydrogen bonds: A:Q.19, A:C.25, A:G.68, A:D.162 Water bridges: A:C.22, A:W.189 Halogen bonds: A:G.67

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: N.18, Q.19, G.20, Q.21, W.189 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hardegger, L.A. et al., Halogen Bonding at the Active Sites of Human Cathepsin L and Mek1 Kinase: Efficient Interactions in Different Environments. Chemmedchem (2011)

Release Date

2011-11-23

Peptides

CATHEPSIN L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CATHEPSIN L1

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