SMTL ID : 2zk6.2 (1 other biounit)

Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with C8-BODIPY

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-dimer

Ligands

2 x C08: difluoro(5-{2-[(5-octyl-1H-pyrrol-2-yl-kappaN)methylidene]-2H-pyrrol-5-yl-kappaN}pentanoato)boron(Non-covalent)

C08.1: 15 residues within 4Å: Chain A: F.36, F.74, I.77, I.91, C.95, R.98, S.99, A.102, I.106, I.136, M.139, L.140, I.151, S.152, M.174 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.36, A:I.77, A:I.91, A:A.102, A:I.106, A:M.139, A:L.140, A:L.140, A:I.151, A:I.151 Hydrogen bonds: A:S.152 C08.2: 11 residues within 4Å: Chain B: L.38, G.94, C.95, R.98, S.99, I.136, L.140, L.143, I.151, S.152, M.174 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.38, B:R.98, B:I.136, B:L.140, B:L.143, B:I.151, B:I.151 Hydrogen bonds: B:S.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Waku, T. et al., The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites. Embo J. (2010)

Release Date

2009-02-24

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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