SMTL ID : 3vji.1

Human PPAR gamma ligand binding domain in complex with JKPL53

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

homo-dimer

Ligands

1 x J53: (2S)-2-{4-butoxy-3-[({4-[(3S,5S,7S)-tricyclo[3.3.1.1~3,7~]dec-1-yl]benzoyl}amino)methyl]benzyl}butanoic acid(Non-covalent)

J53.1: 14 residues within 4Å: Chain A: E.69, R.90, F.92, G.94, C.95, Q.96, R.98, S.99, H.133, I.136, Y.137, I.151, H.259, Y.283 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.92, A:F.92, A:Q.96, A:I.136, A:I.151 Hydrogen bonds: A:S.99, A:Y.283 Salt bridges: A:H.133, A:H.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuwabara, N. et al., Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype. J.Med.Chem. (2012)

Release Date

2012-08-29

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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