SMTL ID : 3vsp.2 (1 other biounit)

Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

1 x EK8: (2R)-2-benzyl-3-[3-({[4-(piperidin-1-yl)benzoyl]amino}methyl)-4-propoxyphenyl]propanoic acid(Non-covalent)

EK8.1: 23 residues within 4Å: Chain A: E.69, F.74, R.90, I.91, F.92, G.94, C.95, Q.96, R.98, S.99, H.133, I.136, Y.137, V.149, I.151, S.152, M.158, L.163, M.174, H.259, L.263, L.279, Y.283 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.74, A:F.92, A:F.92, A:Q.96, A:V.149, A:I.151, A:M.158, A:L.163, A:L.263, A:L.279 Hydrogen bonds: A:S.99, A:S.152, A:Y.283 Salt bridges: A:H.133, A:H.259 pi-Stacking: A:H.259

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oyama, T. et al., Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt28. To be Published

Release Date

2013-05-01

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

Related Entries With Identical Sequence