SMTL ID : 3c8k.1

The crystal structure of Ly49C bound to H-2Kb

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x SER- ILE- ILE- ASN- PHE- GLU- LYS- LEU: Ovalbumin peptide(Non-covalent)

SER-ILE-ILE-ASN-PHE-GLU-LYS-LEU.1: 30 residues within 4Å: Chain A: Y.7, V.9, Y.22, E.24, Y.45, R.62, E.63, K.66, N.70, S.73, F.74, V.76, D.77, T.80, L.81, Y.84, V.97, S.99, Q.114, Y.116, Y.123, T.143, K.146, W.147, E.152, R.155, L.156, Y.159, W.167, Y.171 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:Y.7, A:Y.7, A:E.24, A:K.66, A:K.66, A:N.70, A:F.74, A:F.74, A:D.77, A:L.81, A:V.97, A:Y.116, A:Y.123, A:W.147, A:E.152, A:L.156, A:Y.159, A:Y.159 Hydrogen bonds: A:R.62, A:E.63, A:K.66, A:N.70, A:N.70, A:S.73, A:D.77, A:Y.84, A:T.143, A:R.155, A:Y.159, A:Y.159, A:W.167, A:Y.171 Salt bridges: A:K.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, L. et al., Molecular architecture of the major histocompatibility complex class I-binding site of Ly49 natural killer cell receptors. J.Biol.Chem. (2008)

Release Date

2008-04-15

Peptides

H-2 class I histocompatibility antigen, K-B alpha chain: A
beta-2 microglobulin: B
Natural killer cell receptor Ly-49C: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

H-2 class I histocompatibility antigen, K-B alpha chain

beta-2 microglobulin

Natural killer cell receptor Ly-49C

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