- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
AZA.2: 13 residues within 4Å:- Chain A: F.160, L.171, R.177, S.227, V.228, Q.229, N.255
- Chain B: Y.9, I.55, A.57, T.58, D.59
- Ligands: OXY.3
10 PLIP interactions:2 interactions with chain B, 8 interactions with chain A- Hydrogen bonds: B:T.58, B:D.59, A:R.177, A:R.177, A:V.228, A:Q.229, A:Q.229, A:N.255
- pi-Stacking: A:F.160, A:F.160
AZA.5: 13 residues within 4Å:- Chain A: Y.9, I.55, A.57, T.58, D.59
- Chain B: F.160, L.171, R.177, S.227, V.228, Q.229, N.255
- Ligands: OXY.6
10 PLIP interactions:2 interactions with chain A, 8 interactions with chain B- Hydrogen bonds: A:T.58, A:D.59, B:R.177, B:R.177, B:V.228, B:Q.229, B:Q.229, B:N.255
- pi-Stacking: B:F.160, B:F.160
AZA.8: 13 residues within 4Å:- Chain C: F.160, L.171, R.177, S.227, V.228, Q.229, N.255
- Chain D: Y.9, I.55, A.57, T.58, D.59
- Ligands: OXY.9
10 PLIP interactions:2 interactions with chain D, 8 interactions with chain C- Hydrogen bonds: D:T.58, D:D.59, C:R.177, C:R.177, C:V.228, C:Q.229, C:Q.229, C:N.255
- pi-Stacking: C:F.160, C:F.160
AZA.11: 13 residues within 4Å:- Chain C: Y.9, I.55, A.57, T.58, D.59
- Chain D: F.160, L.171, R.177, S.227, V.228, Q.229, N.255
- Ligands: OXY.12
10 PLIP interactions:8 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:R.177, D:R.177, D:V.228, D:Q.229, D:Q.229, D:N.255, C:T.58, C:D.59
- pi-Stacking: D:F.160, D:F.160
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
OXY.3: 6 residues within 4Å:- Chain A: N.255, H.257, G.287, I.289
- Chain B: T.58
- Ligands: AZA.2
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:K.11, B:T.58, A:N.255
OXY.6: 6 residues within 4Å:- Chain A: T.58
- Chain B: N.255, H.257, G.287, I.289
- Ligands: AZA.5
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:K.11, A:T.58, B:N.255
OXY.9: 6 residues within 4Å:- Chain C: N.255, H.257, G.287, I.289
- Chain D: T.58
- Ligands: AZA.8
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:N.255, D:K.11
OXY.12: 6 residues within 4Å:- Chain C: T.58
- Chain D: N.255, H.257, G.287, I.289
- Ligands: AZA.11
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:N.255, C:K.11
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Colloc'h, N. et al., Oxygen pressurized X-ray crystallography: probing the dioxygen binding site in cofactorless urate oxidase and implications for its catalytic mechanism. Biophys.J. (2008)
- Release Date
- 2008-10-07
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NA: SODIUM ION(Non-functional Binders)
- 4 x AZA: 8-AZAXANTHINE(Non-covalent)
- 4 x OXY: OXYGEN MOLECULE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Colloc'h, N. et al., Oxygen pressurized X-ray crystallography: probing the dioxygen binding site in cofactorless urate oxidase and implications for its catalytic mechanism. Biophys.J. (2008)
- Release Date
- 2008-10-07
- Peptides
- Uricase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A