SMTL ID : 3gmq.1

Structure of mouse CD1d expressed in SF9 cells, no ligand added

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.80 Å
Oligo State
hetero-1-1-mer
Ligands
5 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)(Non-functional Binders)(Non-covalent)
2 x BMA: BETA-D-MANNOSE(Non-functional Binders)
4 x MAN: ALPHA-D-MANNOSE(Non-functional Binders)
1 x FUC: ALPHA-L-FUCOSE(Non-covalent)
1 x PLM: PALMITIC ACID(Non-covalent)
4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Schiefner, A. et al., Structural evaluation of potent NKT cell agonists: implications for design of novel stimulatory ligands. J.Mol.Biol. (2009)
Release Date
2009-11-10
Peptides
T-cell surface glycoprotein CD1d1: A
Beta-2 microglobulin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B