SMTL ID : 3j27.1 (3 other biounits)

CryoEM structure of Dengue virus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: H.149, G.152, N.153, T.155, G.156 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain C: A.150, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain C: G.102 Chain E: H.149, A.150, N.153, G.156 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.67 NAG.5: 1 residues within 4Å: Chain C: N.67 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain E: T.66, N.67 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:T.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Cryo-EM structure of the mature dengue virus at 3.5-A resolution. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-12-19

Peptides

Envelope protein E: ACE
Small envelope protein M: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Envelope protein E

Small envelope protein M

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