SMTL ID : 7v3f.4 (3 other biounits)

DENV2_NGC_Fab_C10 28degree (1Fab:3E)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.70 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain C: H.149, N.153, T.155, G.156, H.158 Chain E: W.101, G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain C: G.102 Chain E: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.67, F.90 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.90 Hydrogen bonds: A:N.67 NAG.5: 3 residues within 4Å: Chain C: N.67, F.90, M.118 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.90 NAG.6: 2 residues within 4Å: Chain E: N.67, M.118 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, X.X. et al., Human antibody C10 neutralizes by diminishing Zika but enhancing dengue virus dynamics. Cell (2021)

Release Date

2021-12-29

Peptides

Envelope protein E: ACE
Small envelope protein M: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

E
C

B
E

D
D

F
F

Envelope protein E

Small envelope protein M

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