SMTL ID : 7v3g.3 (3 other biounits)

DENV2_NGC_Fab_C10 28degrees (2Fab:3E)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-18-18-12-12-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: H.149, N.153, T.155, G.156, H.158 Chain U: G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 6 residues within 4Å: Chain K: H.149, N.153, T.155, G.156, H.158 Chain e: G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 6 residues within 4Å: Chain A: G.102 Chain U: H.149, N.153, T.155, G.156, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 6 residues within 4Å: Chain 4: H.149, N.153, T.155, G.156, H.158 Chain o: G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 6 residues within 4Å: Chain K: G.102 Chain e: H.149, N.153, T.155, G.156, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.21: 6 residues within 4Å: Chain 4: G.102 Chain o: H.149, N.153, T.155, G.156, H.158 No protein-ligand interaction detected (PLIP)

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.67, F.90 Ligand excluded by PLIP NAG.3: 4 residues within 4Å: Chain C: N.67, F.90 Chain I: Q.65, D.66 Ligand excluded by PLIP NAG.4: 5 residues within 4Å: Chain E: N.67, M.118 Chain G: Y.60, Q.65, D.66 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain K: N.67, F.90 Ligand excluded by PLIP NAG.7: 4 residues within 4Å: Chain M: N.67, F.90 Chain S: Q.65, D.66 Ligand excluded by PLIP NAG.8: 5 residues within 4Å: Chain O: N.67, M.118 Chain Q: Y.60, Q.65, D.66 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain U: N.67, F.90 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain 2: Q.65, D.66 Chain W: N.67, F.90 Ligand excluded by PLIP NAG.12: 5 residues within 4Å: Chain 0: Y.60, Q.65, D.66 Chain Y: N.67, M.118 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain 4: N.67, F.90 Ligand excluded by PLIP NAG.15: 4 residues within 4Å: Chain 6: N.67, F.90 Chain c: Q.65, D.66 Ligand excluded by PLIP NAG.16: 5 residues within 4Å: Chain 8: N.67, M.118 Chain a: Y.60, Q.65, D.66 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain e: N.67, F.90 Ligand excluded by PLIP NAG.19: 4 residues within 4Å: Chain g: N.67, F.90 Chain m: Q.65, D.66 Ligand excluded by PLIP NAG.20: 5 residues within 4Å: Chain i: N.67, M.118 Chain k: Y.60, Q.65, D.66 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain o: N.67, F.90 Ligand excluded by PLIP NAG.23: 4 residues within 4Å: Chain q: N.67, F.90 Chain w: Q.65, D.66 Ligand excluded by PLIP NAG.24: 5 residues within 4Å: Chain s: N.67, M.118 Chain u: Y.60, Q.65, D.66 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, X.X. et al., Human antibody C10 neutralizes by diminishing Zika but enhancing dengue virus dynamics. Cell (2021)

Release Date

2021-12-29

Peptides

Envelope protein E: ACEKMOUWY468egioqs
Small envelope protein M: BDFLNPVXZ579fhjprt
Fab_C10_light_chain: GIQS02ackmuw
Fab_C10_heavy_chain: HJRT13bdlnvx

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

E
C

K
B

M
A

O
C

U
B

W
A

Y
C

4
B

6
A

8
C

e
B

g
A

i
C

o
B

q
A

s
C

B
E

D
D

F
F

L
E

N
D

P
F

V
E

X
D

Z
F

5
E

7
D

9
F

f
E

h
D

j
F

p
E

r
D

t
F

G
I

I
G

Q
I

S
G

0
I

2
G

a
I

c
G

k
I

m
G

u
I

w
G

H
M

J
H

R
M

T
H

1
M

3
H

b
M

d
H

l
M

n
H

v
M

x
H

Envelope protein E

Small envelope protein M

Fab_C10_light_chain

Fab_C10_heavy_chain

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