SMTL ID : 7v3f.2 (3 other biounits)

DENV2_NGC_Fab_C10 28degree (1Fab:3E)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.10 Å

Oligo State

hetero-15-15-mer

Ligands

15 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 7 residues within 4Å: Chain C: H.149, N.153, T.155, G.156, H.158 Chain E: W.101, G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 5 residues within 4Å: Chain C: G.102 Chain E: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 4 residues within 4Å: Chain G: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 7 residues within 4Å: Chain I: H.149, N.153, T.155, G.156, H.158 Chain K: W.101, G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 5 residues within 4Å: Chain I: G.102 Chain K: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 4 residues within 4Å: Chain M: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 7 residues within 4Å: Chain O: H.149, N.153, T.155, G.156, H.158 Chain Q: W.101, G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 5 residues within 4Å: Chain O: G.102 Chain Q: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.19: 4 residues within 4Å: Chain S: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.20: 7 residues within 4Å: Chain U: H.149, N.153, T.155, G.156, H.158 Chain W: W.101, G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.21: 5 residues within 4Å: Chain U: G.102 Chain W: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.25: 4 residues within 4Å: Chain Y: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.26: 7 residues within 4Å: Chain 0: H.149, N.153, T.155, G.156, H.158 Chain 2: W.101, G.102 No protein-ligand interaction detected (PLIP) NAG-NAG.27: 5 residues within 4Å: Chain 0: G.102 Chain 2: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP)

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.67, F.90 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain C: N.67, F.90, M.118 Ligand excluded by PLIP NAG.6: 2 residues within 4Å: Chain E: N.67, M.118 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain G: N.67, F.90 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain I: N.67, F.90, M.118 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain K: N.67, M.118 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain M: N.67, F.90 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain O: N.67, F.90, M.118 Ligand excluded by PLIP NAG.18: 2 residues within 4Å: Chain Q: N.67, M.118 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain S: N.67, F.90 Ligand excluded by PLIP NAG.23: 3 residues within 4Å: Chain U: N.67, F.90, M.118 Ligand excluded by PLIP NAG.24: 2 residues within 4Å: Chain W: N.67, M.118 Ligand excluded by PLIP NAG.28: 2 residues within 4Å: Chain Y: N.67, F.90 Ligand excluded by PLIP NAG.29: 3 residues within 4Å: Chain 0: N.67, F.90, M.118 Ligand excluded by PLIP NAG.30: 2 residues within 4Å: Chain 2: N.67, M.118 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, X.X. et al., Human antibody C10 neutralizes by diminishing Zika but enhancing dengue virus dynamics. Cell (2021)

Release Date

2021-12-29

Peptides

Envelope protein E: ACEGIKMOQSUWY02
Small envelope protein M: BDFHJLNPRTVXZ13

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

E
C

G
B

I
A

K
C

M
B

O
A

Q
C

S
B

U
A

W
C

Y
B

0
A

2
C

B
E

D
D

F
F

H
E

J
D

L
F

N
E

P
D

R
F

T
E

V
D

X
F

Z
E

1
D

3
F

Envelope protein E

Small envelope protein M

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