SMTL ID : 7v3h.3 (2 other biounits)

DENV2_NGC_Fab_C10 28degrees (3Fab:3E)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.67, F.90 Chain K: Y.60, Q.65, D.66 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain K Hydrophobic interactions: A:F.90 Hydrogen bonds: A:N.67, K:Q.65, K:Q.65 NAG.3: 3 residues within 4Å: Chain C: N.67 Chain I: Q.65, D.66 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:Q.65, I:D.66 NAG.4: 5 residues within 4Å: Chain E: N.67, R.89, M.118 Chain G: Q.65, D.66 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:Q.65, G:D.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, X.X. et al., Human antibody C10 neutralizes by diminishing Zika but enhancing dengue virus dynamics. Cell (2021)

Release Date

2021-12-29

Peptides

Envelope protein E: ACE
Small envelope protein M: BDF
C10 IgG light chain variable region: GIK
C10 IgG heavy chain variable region: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

E
C

B
E

D
D

F
F

G
I

I
G

K
K

H
M

J
H

L
L

Envelope protein E

Small envelope protein M

C10 IgG light chain variable region

C10 IgG heavy chain variable region

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