SMTL ID : 7v3g.1 (3 other biounits)

DENV2_NGC_Fab_C10 28degrees (2Fab:3E)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-2-2-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: H.149, N.153, T.155, G.156, H.158 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.67, F.90 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.90 Hydrogen bonds: A:N.67 NAG.3: 4 residues within 4Å: Chain C: N.67, F.90 Chain I: Q.65, D.66 2 PLIP interactions: 1 interactions with chain I, 1 interactions with chain C Hydrogen bonds: I:Q.65 Hydrophobic interactions: C:F.90 NAG.4: 5 residues within 4Å: Chain E: N.67, M.118 Chain G: Y.60, Q.65, D.66 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:Q.65, G:Q.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, X.X. et al., Human antibody C10 neutralizes by diminishing Zika but enhancing dengue virus dynamics. Cell (2021)

Release Date

2021-12-29

Peptides

Envelope protein E: ACE
Small envelope protein M: BDF
Fab_C10_light_chain: GI
Fab_C10_heavy_chain: HJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

E
C

B
E

D
D

F
F

G
I

I
G

H
M

J
H

Envelope protein E

Small envelope protein M

Fab_C10_light_chain

Fab_C10_heavy_chain

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