SMTL ID : 7v3h.2 (2 other biounits)

DENV2_NGC_Fab_C10 28degrees (3Fab:3E)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-15-15-15-15-mer

Ligands

5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain M: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 4 residues within 4Å: Chain Y: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 4 residues within 4Å: Chain a: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 4 residues within 4Å: Chain m: H.149, N.153, T.155, H.158 No protein-ligand interaction detected (PLIP)

15 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.67, F.90 Chain K: Y.60, Q.65, D.66 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain C: N.67 Chain I: Q.65, D.66 Ligand excluded by PLIP NAG.4: 5 residues within 4Å: Chain E: N.67, R.89, M.118 Chain G: Q.65, D.66 Ligand excluded by PLIP NAG.6: 5 residues within 4Å: Chain M: N.67, F.90 Chain W: Y.60, Q.65, D.66 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain O: N.67 Chain U: Q.65, D.66 Ligand excluded by PLIP NAG.8: 5 residues within 4Å: Chain Q: N.67, R.89, M.118 Chain S: Q.65, D.66 Ligand excluded by PLIP NAG.10: 5 residues within 4Å: Chain 8: Y.60, Q.65, D.66 Chain Y: N.67, F.90 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain 0: N.67 Chain 6: Q.65, D.66 Ligand excluded by PLIP NAG.12: 5 residues within 4Å: Chain 2: N.67, R.89, M.118 Chain 4: Q.65, D.66 Ligand excluded by PLIP NAG.14: 5 residues within 4Å: Chain a: N.67, F.90 Chain k: Y.60, Q.65, D.66 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain c: N.67 Chain i: Q.65, D.66 Ligand excluded by PLIP NAG.16: 5 residues within 4Å: Chain e: N.67, R.89, M.118 Chain g: Q.65, D.66 Ligand excluded by PLIP NAG.18: 5 residues within 4Å: Chain m: N.67, F.90 Chain w: Y.60, Q.65, D.66 Ligand excluded by PLIP NAG.19: 3 residues within 4Å: Chain o: N.67 Chain u: Q.65, D.66 Ligand excluded by PLIP NAG.20: 5 residues within 4Å: Chain q: N.67, R.89, M.118 Chain s: Q.65, D.66 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lim, X.X. et al., Human antibody C10 neutralizes by diminishing Zika but enhancing dengue virus dynamics. Cell (2021)

Release Date

2021-12-29

Peptides

Envelope protein E: ACEMOQY02acemoq
Small envelope protein M: BDFNPRZ13bdfnpr
C10 IgG light chain variable region: GIKSUW468giksuw
C10 IgG heavy chain variable region: HJLTVX579hjltvx

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
A

E
C

M
B

O
A

Q
C

Y
B

0
A

2
C

a
B

c
A

e
C

m
B

o
A

q
C

B
E

D
D

F
F

N
E

P
D

R
F

Z
E

1
D

3
F

b
E

d
D

f
F

n
E

p
D

r
F

G
I

I
G

K
K

S
I

U
G

W
K

4
I

6
G

8
K

g
I

i
G

k
K

s
I

u
G

w
K

H
M

J
H

L
L

T
M

V
H

X
L

5
M

7
H

9
L

h
M

j
H

l
L

t
M

v
H

x
L

Envelope protein E

Small envelope protein M

C10 IgG light chain variable region

C10 IgG heavy chain variable region

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