- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.40 Å
- Oligo State
- hetero-6-6-2-mer
- Ligands
- 6 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
GTP.1: 23 residues within 4Å:- Chain A: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain E: L.246, K.252
- Ligands: MG.2
21 PLIP interactions:20 interactions with chain A, 1 interactions with chain E- Hydrogen bonds: A:Q.11, A:A.12, A:D.98, A:A.99, A:A.100, A:N.101, A:S.140, A:G.144, A:T.145, A:T.145, A:T.145, A:G.146, A:E.183, A:E.183, A:N.206, A:N.228, A:N.228, A:N.228
- pi-Stacking: A:Y.224, A:Y.224
- Salt bridges: E:K.252
GTP.4: 23 residues within 4Å:- Chain B: L.246, K.252
- Chain D: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231
- Ligands: MG.5
20 PLIP interactions:19 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:Q.11, D:A.12, D:D.98, D:A.99, D:A.100, D:N.101, D:S.140, D:G.144, D:T.145, D:T.145, D:G.146, D:E.183, D:E.183, D:N.206, D:N.228, D:N.228, D:N.228
- pi-Stacking: D:Y.224, D:Y.224
- Salt bridges: B:K.252
GTP.7: 23 residues within 4Å:- Chain F: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain I: L.246, K.252
- Ligands: MG.8
20 PLIP interactions:19 interactions with chain F, 1 interactions with chain I- Hydrogen bonds: F:Q.11, F:A.12, F:D.98, F:A.99, F:A.100, F:N.101, F:S.140, F:G.144, F:T.145, F:T.145, F:G.146, F:E.183, F:E.183, F:N.206, F:N.228, F:N.228, F:N.228
- pi-Stacking: F:Y.224, F:Y.224
- Salt bridges: I:K.252
GTP.10: 23 residues within 4Å:- Chain G: L.246, K.252
- Chain H: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231
- Ligands: MG.11
20 PLIP interactions:19 interactions with chain H, 1 interactions with chain G- Hydrogen bonds: H:Q.11, H:A.12, H:D.98, H:A.99, H:A.100, H:N.101, H:S.140, H:G.144, H:T.145, H:T.145, H:G.146, H:E.183, H:E.183, H:N.206, H:N.228, H:N.228, H:N.228
- pi-Stacking: H:Y.224, H:Y.224
- Salt bridges: G:K.252
GTP.13: 23 residues within 4Å:- Chain J: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231
- Chain N: L.246, K.252
- Ligands: MG.14
21 PLIP interactions:20 interactions with chain J, 1 interactions with chain N- Hydrogen bonds: J:Q.11, J:A.12, J:D.98, J:A.99, J:A.100, J:N.101, J:S.140, J:G.144, J:T.145, J:T.145, J:T.145, J:G.146, J:E.183, J:E.183, J:N.206, J:N.228, J:N.228, J:N.228
- pi-Stacking: J:Y.224, J:Y.224
- Salt bridges: N:K.252
GTP.16: 23 residues within 4Å:- Chain K: L.246, K.252
- Chain M: G.10, Q.11, A.12, Q.15, D.98, A.99, A.100, N.101, S.140, G.143, G.144, T.145, G.146, I.171, T.179, E.183, N.206, Y.224, N.228, I.231
- Ligands: MG.17
20 PLIP interactions:19 interactions with chain M, 1 interactions with chain K- Hydrogen bonds: M:Q.11, M:A.12, M:D.98, M:A.99, M:A.100, M:N.101, M:S.140, M:G.144, M:T.145, M:T.145, M:G.146, M:E.183, M:E.183, M:N.206, M:N.228, M:N.228, M:N.228
- pi-Stacking: M:Y.224, M:Y.224
- Salt bridges: K:K.252
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain A: E.71
- Chain E: K.252
- Ligands: GTP.1
No protein-ligand interaction detected (PLIP)MG.5: 2 residues within 4Å:- Chain D: E.71
- Ligands: GTP.4
No protein-ligand interaction detected (PLIP)MG.8: 2 residues within 4Å:- Chain F: E.71
- Ligands: GTP.7
No protein-ligand interaction detected (PLIP)MG.11: 2 residues within 4Å:- Chain H: E.71
- Ligands: GTP.10
No protein-ligand interaction detected (PLIP)MG.14: 3 residues within 4Å:- Chain J: E.71
- Chain N: K.252
- Ligands: GTP.13
No protein-ligand interaction detected (PLIP)MG.17: 2 residues within 4Å:- Chain M: E.71
- Ligands: GTP.16
No protein-ligand interaction detected (PLIP)- 6 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.3: 13 residues within 4Å:- Chain B: G.10, Q.11, C.12, Q.15, S.138, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, N.226
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:Q.11, B:C.12, B:S.138, B:G.142, B:T.143, B:T.143, B:G.144, B:D.177, B:D.177, B:N.204, B:N.204, B:N.226, B:N.226
- pi-Stacking: B:Y.222, B:Y.222
GDP.6: 13 residues within 4Å:- Chain E: G.10, Q.11, C.12, Q.15, S.138, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, N.226
15 PLIP interactions:15 interactions with chain E- Hydrogen bonds: E:Q.11, E:C.12, E:S.138, E:G.142, E:T.143, E:T.143, E:G.144, E:D.177, E:D.177, E:N.204, E:N.204, E:N.226, E:N.226
- pi-Stacking: E:Y.222, E:Y.222
GDP.9: 13 residues within 4Å:- Chain G: G.10, Q.11, C.12, Q.15, S.138, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, N.226
15 PLIP interactions:15 interactions with chain G- Hydrogen bonds: G:Q.11, G:C.12, G:S.138, G:G.142, G:T.143, G:T.143, G:G.144, G:D.177, G:D.177, G:N.204, G:N.204, G:N.226, G:N.226
- pi-Stacking: G:Y.222, G:Y.222
GDP.12: 13 residues within 4Å:- Chain I: G.10, Q.11, C.12, Q.15, S.138, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, N.226
15 PLIP interactions:15 interactions with chain I- Hydrogen bonds: I:Q.11, I:C.12, I:S.138, I:G.142, I:T.143, I:T.143, I:G.144, I:D.177, I:D.177, I:N.204, I:N.204, I:N.226, I:N.226
- pi-Stacking: I:Y.222, I:Y.222
GDP.15: 13 residues within 4Å:- Chain K: G.10, Q.11, C.12, Q.15, S.138, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, N.226
15 PLIP interactions:15 interactions with chain K- Hydrogen bonds: K:Q.11, K:C.12, K:S.138, K:G.142, K:T.143, K:T.143, K:G.144, K:D.177, K:D.177, K:N.204, K:N.204, K:N.226, K:N.226
- pi-Stacking: K:Y.222, K:Y.222
GDP.18: 13 residues within 4Å:- Chain N: G.10, Q.11, C.12, Q.15, S.138, G.141, G.142, T.143, G.144, D.177, N.204, Y.222, N.226
15 PLIP interactions:15 interactions with chain N- Hydrogen bonds: N:Q.11, N:C.12, N:S.138, N:G.142, N:T.143, N:T.143, N:G.144, N:D.177, N:D.177, N:N.204, N:N.204, N:N.226, N:N.226
- pi-Stacking: N:Y.222, N:Y.222
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, R. et al., Mechanistic Origin of Microtubule Dynamic Instability and Its Modulation by EB Proteins. Cell(Cambridge,Mass.) (2015)
- Release Date
- 2015-08-12
- Peptides
- Tubulin alpha-1B chain: ADFHJM
Tubulin beta chain: BEGIKN
Microtubule-associated protein RP/EB family member 3: CL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
ED
JF
CH
LJ
AM
KB
FE
GG
DI
IK
BN
HC
NL
M
SMTL ID : 3jar.1
Cryo-EM structure of GDP-microtubule co-polymerized with EB3
Tubulin alpha-1B chain
Toggle Identical (ADFHJM)Tubulin beta chain
Toggle Identical (BEGIKN)Microtubule-associated protein RP/EB family member 3
Toggle Identical (CL)Related Entries With Identical Sequence
1ffx.1 | 1ia0.1 | 1jff.1 | 1sa0.1 | 1sa1.1 | 2hxf.1 | 2hxh.1 | 2p4n.1 | 2wbe.2 | 3dco.1 | 3edl.1 | 3edl.2 | 3iz0.1 | 3j2u.1 | 3j2u.2 | 3j6p.1 | 3j7i.1 | 3j8x.1 | 3j8y.1 | 3jak.1 | 3jal.1 | 3jao.1 | 3jao.2 | 3jas.1 | 3jat.1 | 3jaw.1 | 3ryc.1 | 3ryf.1 | 3ryh.1 | 3ryi.1 more...less...3ut5.1 | 4abo.1 | 4eb6.1 | 4f61.1 | 4f6r.1 | 4hna.1 | 4i50.1 | 4iij.1 | 4lnu.1 | 4o2a.1 | 4o2b.1 | 4o4h.1 | 4o4i.1 | 4o4j.1 | 4o4l.1 | 4tuy.1 | 4tv8.1 | 4tv9.1 | 4yj2.1 | 4yj3.1 | 4zhq.1 | 4zi7.1 | 4zol.1 | 5bmv.1 | 5ca0.1 | 5eib.1 | 5eyp.1 | 5fnv.1 | 5itz.1 | 5iyz.1 | 5j2t.1 | 5j2u.1 | 5jcb.1 | 5jqg.1 | 5jvd.1 | 5la6.1 | 5lov.1 | 5lxs.1 | 5lxt.1 | 5lyj.1 | 5m7e.1 | 5m7g.1 | 5m8d.1 | 5m8g.1 | 5mf4.1 | 5mio.1 | 5nfz.1 | 5ng1.1 | 5nm5.1 | 5nqt.1 | 5nqu.1 | 5o7a.1 | 5oam.1 | 5ocu.1 | 5ogc.1 | 5osk.1 | 5ov7.1 | 5s4l.1 | 5s4m.1 | 5s4n.1 | 5s4o.1 | 5s4p.1 | 5s4q.1 | 5s4r.1 | 5s4s.1 | 5s4t.1 | 5s4u.1 | 5s4v.1 | 5s4w.1 | 5s4x.1 | 5s4y.1 | 5s4z.1 | 5s50.1 | 5s51.1 | 5s52.1 | 5s53.1 | 5s54.1 | 5s55.1 | 5s56.1 | 5s57.1 | 5s58.1 | 5s59.1 | 5s5a.1 | 5s5b.1 | 5s5c.1 | 5s5d.1 | 5s5e.1 | 5s5f.1 | 5s5g.1 | 5s5h.1 | 5s5i.1 | 5s5j.1 | 5s5k.1 | 5s5l.1 | 5s5m.1 | 5s5n.1 | 5s5o.1 | 5s5p.1 | 5s5q.1 | 5s5r.1 | 5s5s.1 | 5s5t.1 | 5s5u.1 | 5s5v.1 | 5s5w.1 | 5s5x.1 | 5s5y.1 | 5s5z.1 | 5s60.1 | 5s61.1 | 5s62.1 | 5s63.1 | 5s64.1 | 5s65.1 | 5s66.1 | 5s67.1 | 5sb3.1 | 5sb4.1 | 5sb5.1 | 5sb6.1 | 5sb7.1 | 5sb8.1 | 5sb9.1 | 5sba.1 | 5sbb.1 | 5sbc.1 | 5sbd.1 | 5sbe.1 | 5xaf.1 | 5xag.1 | 5xiw.1 | 5xke.1 | 5xkf.1 | 5xkg.1 | 5xkh.1 | 5xp3.1 | 5yl2.1 | 5ylj.1 | 5yls.1 | 6b0c.1 | 6b0c.2 | 6b0i.1 | 6b0i.2 | 6b0l.1 | 6b0l.2 | 6bbn.1 | 6bjc.1 | 6cvj.1 | 6cvj.2 | 6cvn.1 | 6cvn.2 | 6dpu.1 | 6dpv.1 | 6dpw.1 | 6evx.1 | 6evy.1 | 6evz.1 | 6ew0.1 | 6f7c.1 | 6fii.1 | 6fjf.1 | 6fjm.1 | 6fkj.1 | 6fkl.1 | 6gf3.1 | 6gj4.1 | 6gvm.1 | 6gvn.1 | 6gwc.1 | 6gwd.1 | 6gx7.1 | 6gx7.2 | 6hx8.1 | 6i2i.1 | 6ls4.1 | 6mlq.1 | 6mlr.1 | 6mze.1 | 6mze.2 | 6mzf.1 | 6mzf.2 | 6mzg.1 | 6mzg.2 | 6o2q.1 | 6o2r.1 | 6o2s.1 | 6o2s.2 | 6o2s.3 | 6o2s.4 | 6o2s.5 | 6o2s.6 | 6o2s.7 | 6o2s.8 | 6o2s.9 | 6o2s.10 | 6o2s.11 | 6o2s.12 | 6o2s.13 | 6o2s.14 | 6o2s.15 | 6o2s.16 | 6o2s.17 | 6o2s.18 | 6o2s.19 | 6o2s.20 | 6o2s.21 | 6o2s.22 | 6o2s.23 | 6o2s.24 | 6o2s.25 | 6o2s.26 | 6o2s.27 | 6o2s.28 | 6o2s.29 | 6o2s.30 | 6o2s.31 | 6o2s.32 | 6o2s.33 | 6o2s.34 | 6o2s.35 | 6o2s.36 | 6o2s.37 | 6o2s.38 | 6o2s.39 | 6o2s.40 | 6o2s.41 | 6o2s.42 | 6o2s.43 | 6o2s.44 | 6o2s.45 | 6o2s.46 | 6o2s.47 | 6o2s.48 | 6o2s.49 | 6o2s.50 | 6o2s.51 | 6o2s.52 | 6o2s.53 | 6o2s.54 | 6o2s.55 | 6o2s.56 | 6o2s.57 | 6o2s.58 | 6o2s.59 | 6o2s.60 | 6o2s.61 | 6o2s.62 | 6o2s.63 | 6o2s.64 | 6o2s.65 | 6o2s.66 | 6o2s.67 | 6o2s.68 | 6o2s.69 | 6o2s.70 | 6o2s.71 | 6o2s.72 | 6o2s.73 | 6o2s.74 | 6o2s.75 | 6o2s.76 | 6o2s.77 | 6o2s.78 | 6o2s.79 | 6o2s.80 | 6o2s.81 | 6o2s.82 | 6o2s.83 | 6o2s.84 | 6o2s.85 | 6o2s.86 | 6o2s.87 | 6o2s.88 | 6o2s.89 | 6o2s.90 | 6o2s.91 | 6o2s.92 | 6o2s.93 | 6o2s.94 | 6o2s.95 | 6o2s.96 | 6o2s.97 | 6o2s.98 | 6o2s.99 | 6o2s.100 | 6o2s.101 | 6o2s.102 | 6o2s.103 | 6o2s.104 | 6o2t.1 | 6o2t.2 | 6o2t.3 | 6o2t.4 | 6o2t.5 | 6o2t.6 | 6o2t.7 | 6o2t.8 | 6o2t.9 | 6o2t.10 | 6o2t.11 | 6o2t.12 | 6o2t.13 | 6o2t.14 | 6o2t.15 | 6o2t.16 | 6o2t.17 | 6o2t.18 | 6o2t.19 | 6o2t.20 | 6o2t.21 | 6o2t.22 | 6o2t.23 | 6o2t.24 | 6o2t.25 | 6o2t.26 | 6o2t.27 | 6o2t.28 | 6o2t.29 | 6o2t.30 | 6o2t.31 | 6o2t.32 | 6o2t.33 | 6o2t.34 | 6o2t.35 | 6o2t.36 | 6o2t.37 | 6o2t.38 | 6o2t.39 | 6o2t.40 | 6o2t.41 | 6o2t.42 | 6o2t.43 | 6o2t.44 | 6o2t.45 | 6o2t.46 | 6o2t.47 | 6o2t.48 | 6o2t.49 | 6o2t.50 | 6o2t.51 | 6o2t.52 | 6o2t.53 | 6o2t.54 | 6o2t.55 | 6o2t.56 | 6o2t.57 | 6o2t.58 | 6o2t.59 | 6o2t.60 | 6o2t.61 | 6o2t.62 | 6o2t.63 | 6o2t.64 | 6o2t.65 | 6o2t.66 | 6o2t.67 | 6o2t.68 | 6o2t.69 | 6o2t.70 | 6o2t.71 | 6o2t.72 | 6o2t.73 | 6o2t.74 | 6o2t.75 | 6o2t.76 | 6o2t.77 | 6o2t.78 | 6o2t.79 | 6o2t.80 | 6o2t.81 | 6o2t.82 | 6o2t.83 | 6o2t.84 | 6o2t.85 | 6o2t.86 | 6o2t.87 | 6o2t.88 | 6o2t.89 | 6o2t.90 | 6o2t.91 | 6o2t.92 | 6o2t.93 | 6o2t.94 | 6o2t.95 | 6o2t.96 | 6o2t.97 | 6o2t.98 | 6o2t.99 | 6o2t.100 | 6o2t.101 | 6o2t.102 | 6o2t.103 | 6o2t.104 | 6qqn.1 | 6qtn.1 | 6qus.1 | 6quy.1 | 6qve.1 | 6qvj.1 | 6s8l.1 | 6ses.1 | 6tde.1 | 6th4.1 | 6vpo.1 | 6vpp.1 | 6wvl.1 | 6wvm.1 | 6wvr.1 | 6wwe.1 | 6wwf.1 | 6wwg.1 | 6wwh.1 | 6wwi.1 | 6wwj.1 | 6wwk.1 | 6wwl.1 | 6wwm.1 | 6wwn.1 | 6wwo.1 | 6wwp.1 | 6wwq.1 | 6wwr.1 | 6wws.1 | 6wwt.1 | 6wwu.1 | 6wwv.1 | 6y4m.1 | 6y4n.1 | 6y6d.1 | 6zwb.1 | 6zwc.1 | 7ac5.1 | 7alr.1 | 7au5.1 | 7cbz.1 | 7cnm.1 | 7cnn.1 | 7cno.1 | 7cpd.1 | 7cpq.1 | 7dad.1 | 7dae.1 | 7daf.1 | 7db9.1 | 7dba.1 | 7dbb.1 | 7dbc.1 | 7dbd.1 | 7dmz.1 | 7dn0.1 | 7emj.1 | 7en3.1 | 7exc.1 | 7l05.1 | 7lvq.1 | 7lvr.1 | 7lxb.1 | 7m18.1 | 7m20.1 | 7nb8.1 | 7nba.1 | 7odn.1 | 7ogn.1 | 7pjf.1 | 7pqc.1 | 7pqp.1 | 7q1e.1 | 7q1f.1 | 7q1f.2 | 7rs5.1 | 7rs6.1 | 7rx0.1 | 7sgs.1 | 7tqx.1 | 7tqy.1 | 7tqz.1 | 7tr0.1 | 7tr1.1 | 7tr2.1 | 7tr3.1 | 7u0f.1 | 7u0f.2 | 7x4n.1 | 7yhn.1 | 7ysn.1 | 7yso.1 | 7ysp.1 | 7yyq.1 | 7yyv.1 | 7yyw.1 | 7yyx.1 | 7yyy.1 | 7yyz.1 | 7yz0.1 | 7yz1.1 | 7yz2.1 | 7yz3.1 | 7yz5.1 | 7yz6.1 | 7z01.1 | 7z02.1 | 7z0f.1 | 7z0g.1 | 7z0g.2 | 7z2n.1 | 7z2p.1 | 7z7d.1 | 7zcw.1 | 7zx2.1 | 7zyw.1 | 8a0l.1 | 8a9t.1 | 8a9z.1 | 8ahm.1 | 8asn.1 | 8b7a.1 | 8b7b.1 | 8b7c.1 | 8bde.1 | 8bdf.1 | 8bdg.1 | 8c0f.1 | 8c5c.1 | 8cld.1 | 8f18.1 | 8f1a.1 | 8jjb.1 | 8jjc.1 | 8qau.1 | 8rc1.1 | 8riv.1 | 8riw.1 | 8v2i.1