SMTL ID : 3l5d.2 (1 other biounit)

Structure of BACE Bound to SCH723873

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.1: 7 residues within 4Å: Chain A: H.66, F.68, S.126, D.127, K.128, F.129, F.130 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.127, A:K.128, A:F.129, A:F.130 Salt bridges: A:H.66, A:K.128 TAR.2: 5 residues within 4Å: Chain A: R.28, N.49, H.70, R.71, N.135 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.49, A:R.71, A:N.135 Water bridges: A:R.71, A:R.71, A:R.71, A:N.135 Salt bridges: A:R.28, A:H.70, A:R.71, A:R.71

1 x BDV: 1-butyl-3-(4-{[(2Z,4R)-2-imino-4-methyl-4-(2-methylpropyl)-5-oxoimidazolidin-1-yl]methyl}benzyl)urea(Non-covalent)

BDV.3: 14 residues within 4Å: Chain A: G.32, Q.33, G.34, L.51, D.53, G.55, S.56, F.129, I.131, I.139, D.249, G.251, T.252, T.253 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.129, A:I.131 Hydrogen bonds: A:S.56, A:S.56, A:T.253, A:T.253 Water bridges: A:N.254 Salt bridges: A:D.53, A:D.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Z. et al., Discovery of Cyclic Acylguanidines as Highly Potent and Selective beta-Site Amyloid Cleaving Enzyme (BACE) Inhibitors: Part I-Inhibitor Design and Validation. J.Med.Chem. (2010)

Release Date

2010-02-16

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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