SMTL ID : 4h1e.2 (1 other biounit)

Structure of BACE-1 Bound to (7aR)-6-benzoyl-7a-(4-(3-cyanophenyl)thiophen-2-yl)-3-methyl-4-oxohexahydro-1H-pyrrolo[3,4-d]pyrimidin-2(3H)-iminium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 10J: 3-{5-[(2E,4aR,7aR)-6-benzoyl-2-imino-3-methyl-4-oxooctahydro-7aH-pyrrolo[3,4-d]pyrimidin-7a-yl]thiophen-3-yl}benzonitrile(Non-covalent)

10J.1: 20 residues within 4Å: Chain A: S.31, Q.33, G.34, L.51, D.53, G.55, S.56, V.90, Y.92, F.129, W.136, I.139, I.147, R.149, Y.219, D.249, S.250, G.251, T.252, T.253 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.51, A:V.90, A:Y.92, A:W.136, A:I.147 Hydrogen bonds: A:G.55 Water bridges: A:N.58 Salt bridges: A:D.53, A:D.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mandal, M. et al., Design and Validation of Bicyclic Iminopyrimidinones As Beta Amyloid Cleaving Enzyme-1 (BACE1) Inhibitors: Conformational Constraint to Favor a Bioactive Conformation. J.Med.Chem. (2012)

Release Date

2012-10-17

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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