SMTL ID : 5he5.2 (1 other biounit)

BACE-1 in complex with (7aR)-7a-(5-cyanothiophen-2-yl)-6-(5-fluoro-4-methyl-6-(methylamino)pyrimidin-2-yl)-3-methyl-4-oxooctahydro-2H-pyrrolo[3,4-d]pyrimidin-2-iminium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 5 residues within 4Å: Chain A: R.28, N.49, H.70, R.71, N.135 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.49, A:H.70, A:R.71, A:N.135 Water bridges: A:N.49, A:R.71, A:R.71, A:R.71 Salt bridges: A:R.28, A:H.70, A:R.71

1 x 60S: 5-{(2E,4aR,7aR)-6-[5-fluoro-4-methyl-6-(methylamino)pyrimidin-2-yl]-2-imino-3-methyl-4-oxooctahydro-7aH-pyrrolo[3,4-d]pyrimidin-7a-yl}thiophene-2-carbonitrile(Non-covalent)

60S.2: 17 residues within 4Å: Chain A: L.51, D.53, G.55, S.56, N.58, V.90, Y.92, W.97, F.129, I.131, W.136, I.139, I.147, R.149, D.249, G.251, T.252 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:N.58, A:V.90, A:Y.92, A:W.97, A:F.129, A:F.129 Hydrogen bonds: A:R.149 Water bridges: A:N.58, A:T.93, A:T.93, A:R.149, A:R.149, A:Y.219, A:Y.219 Salt bridges: A:D.53, A:D.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mandal, M. et al., Structure-Based Design of an Iminoheterocyclic beta-Site Amyloid Precursor Protein Cleaving Enzyme (BACE) Inhibitor that Lowers Central A beta in Nonhuman Primates. J.Med.Chem. (2016)

Release Date

2016-03-16

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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