SMTL ID : 4ha5.1 (1 other biounit)

Structure of BACE Bound to (S)-3-(5-(2-imino-1,4-dimethyl-6-oxohexahydropyrimidin-4-yl)thiophen-3-yl)benzonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 5 residues within 4Å: Chain A: R.28, N.49, H.70, R.71, N.135 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.49, A:H.70, A:N.135 Water bridges: A:N.49, A:R.71, A:R.71, A:R.71 Salt bridges: A:R.28, A:H.70, A:R.71, A:R.71

1 x 13W: 3-{5-[(2E,4S)-2-imino-1,4-dimethyl-6-oxohexahydropyrimidin-4-yl]thiophen-3-yl}benzonitrile(Non-covalent)

13W.2: 15 residues within 4Å: Chain A: S.31, Q.33, G.34, L.51, D.53, G.55, S.56, Y.92, F.129, W.136, D.249, S.250, G.251, T.252, T.253 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.51, A:Y.92, A:Y.92, A:W.136 Water bridges: A:T.93, A:Q.94 Salt bridges: A:D.53, A:D.249 pi-Stacking: A:Y.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mandal, M. et al., Design and Validation of Bicyclic Iminopyrimidinones As Beta Amyloid Cleaving Enzyme-1 (BACE1) Inhibitors: Conformational Constraint to Favor a Bioactive Conformation. J.Med.Chem. (2012)

Release Date

2012-10-17

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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