SMTL ID : 5he7.2 (1 other biounit)

BACE-1 in complex with (4aR,7aS)-7a-(2,4-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

monomer

Ligands

1 x 60X: (2E,4aR,7aS)-7a-(2,4-difluorophenyl)-6-(5-fluoro-4-methoxy-6-methylpyrimidin-2-yl)-2-imino-3-methyloctahydro-4H-pyrrolo[3,4-d]pyrimidin-4-one(Non-covalent)

60X.1: 16 residues within 4Å: Chain A: D.53, G.55, S.56, N.58, A.60, V.90, Y.92, W.97, F.129, I.131, W.136, I.139, R.149, D.249, G.251, T.252 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.90, A:Y.92, A:I.139, A:R.149 Hydrogen bonds: A:S.56 Water bridges: A:G.55, A:T.93 Salt bridges: A:D.53, A:D.249 Halogen bonds: A:N.58, A:Y.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mandal, M. et al., Structure-Based Design of an Iminoheterocyclic beta-Site Amyloid Precursor Protein Cleaving Enzyme (BACE) Inhibitor that Lowers Central A beta in Nonhuman Primates. J.Med.Chem. (2016)

Release Date

2016-03-16

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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