SMTL ID : 3l5e.2 (1 other biounit)

Structure of BACE Bound to SCH736062

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

2 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.1: 7 residues within 4Å: Chain A: H.66, F.68, S.126, D.127, K.128, F.129, F.130 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.127, A:K.128, A:F.129, A:F.130 Water bridges: A:H.66 Salt bridges: A:H.66 TAR.2: 5 residues within 4Å: Chain A: R.28, N.49, H.70, R.71, N.135 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.49, A:R.71, A:N.135 Water bridges: A:R.71, A:R.71, A:R.71, A:N.135 Salt bridges: A:R.28, A:H.70, A:R.71, A:R.71

1 x BDW: (4S)-1-(4-{[(2Z,4R)-4-(2-cyclohexylethyl)-4-(cyclohexylmethyl)-2-imino-5-oxoimidazolidin-1-yl]methyl}benzyl)-4-propylimidazolidin-2-one(Non-covalent)

BDW.3: 17 residues within 4Å: Chain A: G.32, Q.33, G.34, L.51, D.53, G.55, S.56, V.90, Y.92, F.129, I.131, I.147, R.149, D.249, G.251, T.252, T.253 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.51, A:L.51, A:V.90, A:I.131, A:I.147, A:R.149 Hydrogen bonds: A:S.56, A:T.253, A:T.253 Water bridges: A:N.254 Salt bridges: A:D.53, A:D.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, Z. et al., Discovery of Cyclic Acylguanidines as Highly Potent and Selective beta-Site Amyloid Cleaving Enzyme (BACE) Inhibitors: Part I-Inhibitor Design and Validation. J.Med.Chem. (2010)

Release Date

2010-02-16

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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