SMTL ID : 3lpj.1 (2 other biounits)

Structure of BACE Bound to SCH743641

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 5 residues within 4Å: Chain A: R.69, N.90, H.111, R.112, N.176 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.90, A:H.111, A:N.176 Water bridges: A:R.112, A:R.112, A:R.112, A:N.176 Salt bridges: A:R.69, A:H.111, A:R.112, A:R.112 TLA.3: 5 residues within 4Å: Chain B: R.69, N.90, H.111, R.112, N.176 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.90, B:H.111, B:N.176 Water bridges: B:R.112, B:R.112, B:R.112, B:N.176 Salt bridges: B:R.69, B:H.111, B:R.112, B:R.112

2 x Z75: N'-[(1S,2S)-2-[(2R)-4-benzylpiperazin-2-yl]-1-(3,5-difluorobenzyl)-2-hydroxyethyl]-5-methyl-N,N-dipropylbenzene-1,3-dicarboxamide(Non-covalent)

Z75.2: 23 residues within 4Å: Chain A: G.73, Q.74, L.92, D.94, G.96, S.97, P.132, Y.133, T.134, Q.135, G.136, K.169, F.170, I.172, W.177, I.188, Y.260, I.288, D.290, G.292, T.293, T.294, R.297 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.92, A:Y.133, A:T.134, A:Q.135, A:I.172, A:Y.260 Hydrogen bonds: A:D.94, A:T.134, A:T.134, A:Q.135, A:D.290, A:G.292, A:T.293, A:T.294 Water bridges: A:N.295 pi-Stacking: A:Y.133 Z75.4: 23 residues within 4Å: Chain B: G.73, Q.74, L.92, D.94, G.96, S.97, P.132, Y.133, T.134, Q.135, G.136, K.169, F.170, I.172, W.177, I.188, Y.260, I.288, D.290, G.292, T.293, T.294, R.297 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:L.92, B:Y.133, B:T.134, B:Q.135, B:I.172, B:I.188, B:Y.260 Hydrogen bonds: B:D.94, B:T.134, B:T.134, B:Q.135, B:D.290, B:G.292, B:T.294 Water bridges: B:D.290, B:N.295 pi-Stacking: B:Y.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cumming, J. et al., Piperazine sulfonamide BACE1 inhibitors: design, synthesis, and in vivo characterization. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-04-14

Peptides

Beta-secretase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-secretase 1

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