SMTL ID : 3ohf.1 (2 other biounits)

Crystal structure of beta-site app-cleaving enzyme 1 (BACE-WT) complex with bms-655295 aka n~3~-((1s,2r)-1- benzyl-2-hydroxy-3-((3-methoxybenzyl)amino)propyl)-n~1~, n~1~-dibutyl-1h-indole-1,3-dicarboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x 3HF: N~3~-{(1S,2R)-1-benzyl-2-hydroxy-3-[(3-methoxybenzyl)amino]propyl}-N~1~,N~1~-dibutyl-1H-indole-1,3-dicarboxamide(Non-covalent)

3HF.1: 21 residues within 4Å: Chain A: S.72, G.73, G.75, L.92, D.94, G.96, S.97, V.131, P.132, Y.133, T.134, Q.135, F.170, I.172, I.180, Y.260, D.290, G.292, T.293, T.294, R.297 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.92, A:Y.133, A:Y.133, A:T.134, A:Q.135, A:Q.135, A:F.170, A:I.172, A:I.180, A:Y.260, A:T.293 Hydrogen bonds: A:G.96, A:G.96, A:T.134, A:Q.135, A:G.292, A:T.294 Water bridges: A:S.98, A:T.294, A:N.295 3HF.4: 20 residues within 4Å: Chain B: G.73, G.75, L.92, D.94, G.96, S.97, V.131, P.132, Y.133, T.134, Q.135, F.170, I.172, I.180, Y.260, D.290, G.292, T.293, T.294, R.297 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:L.92, B:Y.133, B:Y.133, B:T.134, B:Q.135, B:Q.135, B:I.172, B:I.180, B:Y.260, B:T.293 Hydrogen bonds: B:G.96, B:G.96, B:T.134, B:Q.135, B:G.292, B:T.294, B:T.294 Water bridges: B:S.98, B:T.293, B:T.293, B:N.295 pi-Stacking: B:F.170

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.5: 1 residues within 4Å: Chain B: R.158 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: F.221, G.335, D.380 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.335, A:D.380 Water bridges: A:G.220, A:W.339 GOL.6: 2 residues within 4Å: Chain B: G.335, D.380 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.335 Water bridges: B:Y.382, B:Y.382

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marcin, L.R. et al., Synthesis and SAR of indole-and 7-azaindole-1,3-dicarboxamide hydroxyethylamine inhibitors of BACE-1. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-04-06

Peptides

Beta-secretase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-secretase 1

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