SMTL ID : 4fse.4 (3 other biounits)

crystal structure of beta-site app-cleaving enzyme 1 (bace-wt) complex with N-(N-(4-amino-3,5- dichlorobenzyl)carbamimidoyl)-3-(4-methoxyphenyl)-5- methyl-4-isothiazolecarboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x 0VA: N-[N-(4-amino-3,5-dichlorobenzyl)carbamimidoyl]-3-(4-methoxyphenyl)-5-methyl-1,2-thiazole-4-carboxamide(Non-covalent)

0VA.1: 19 residues within 4Å: Chain A: L.92, D.94, G.96, Y.133, T.134, Q.135, G.136, K.169, F.170, W.177, Y.260, I.288, D.290, G.292, T.293, R.297, T.391, V.394 Ligands: IOD.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.92, A:T.134, A:Y.260, A:I.288 Hydrogen bonds: A:Q.135, A:K.169, A:G.292, A:T.293, A:T.391 Salt bridges: A:D.94, A:D.290 pi-Stacking: A:Y.133 pi-Cation interactions: A:R.297

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: N.295, R.297 Ligands: 0VA.1 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: K.137, E.166 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerritz, S.W. et al., Acyl guanidine inhibitors of beta-secretase (BACE-1): optimization of a micromolar hit to a nanomolar lead via iterative solid- and solution-phase library synthesis. J.Med.Chem. (2012)

Release Date

2012-10-10

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Beta-secretase 1

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