SMTL ID : 3lpk.1 (2 other biounits)

Structure of BACE Bound to SCH747123

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 5 residues within 4Å: Chain A: R.69, N.90, H.111, R.112, N.176 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:N.90, A:R.112, A:N.176 Water bridges: A:R.112, A:R.112, A:R.112, A:N.176 Salt bridges: A:R.69, A:H.111, A:R.112, A:R.112 TLA.3: 5 residues within 4Å: Chain B: R.69, N.90, H.111, R.112, N.176 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:N.90, B:H.111, B:N.176 Water bridges: B:R.112, B:R.112, B:R.112, B:N.176 Salt bridges: B:R.69, B:H.111, B:R.112, B:R.112

2 x Z76: N-[(1S,2S)-1-(3,5-difluorobenzyl)-2-hydroxy-2-{(2R)-4-[(3-methylphenyl)sulfonyl]piperazin-2-yl}ethyl]-3-{[(2R)-2-(methoxymethyl)pyrrolidin-1-yl]carbonyl}-5-methylbenzamide(Non-covalent)

Z76.2: 25 residues within 4Å: Chain A: S.72, G.73, G.75, L.92, D.94, G.96, S.97, V.131, P.132, Y.133, T.134, Q.135, G.136, F.170, I.172, W.177, I.188, R.190, Y.260, I.288, D.290, G.292, T.293, T.294, R.297 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:L.92, A:V.131, A:Y.133, A:Y.133, A:Q.135, A:I.172, A:Y.260 Hydrogen bonds: A:D.94, A:G.96, A:T.134, A:T.134, A:Q.135, A:Y.260, A:G.292, A:T.293, A:T.294 Water bridges: A:N.295, A:T.391 pi-Stacking: A:Y.133 Z76.4: 25 residues within 4Å: Chain B: S.72, G.73, G.75, L.92, D.94, G.96, S.97, V.131, P.132, Y.133, T.134, Q.135, G.136, F.170, I.172, W.177, I.188, R.190, Y.260, I.288, D.290, G.292, T.293, T.294, R.297 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:L.92, B:V.131, B:Y.133, B:Y.133, B:Q.135, B:F.170, B:I.172, B:Y.260 Hydrogen bonds: B:D.94, B:G.96, B:T.134, B:T.134, B:Q.135, B:Y.260, B:G.292, B:T.293, B:T.294 Water bridges: B:N.295, B:T.391 pi-Stacking: B:Y.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cumming, J. et al., Piperazine sulfonamide BACE1 inhibitors: design, synthesis, and in vivo characterization. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-04-14

Peptides

Beta-secretase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-secretase 1

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