SMTL ID : 3skf.2 (1 other biounit)

Crystal structure of beta-site app-cleaving enzyme 1 (BACE-WT) complex with (2S)-2-((3S)-3-(acetylamino)-3-(butan-2-yl)-2-oxopyrrolidin-1-yl)-N-((2S,3R)-3-hydroxy-4-((3-methoxybenzyl)amino)-1-phenylbutan-2-yl)-4-phenylbutanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x PB7: (2S)-2-{(3S)-3-(acetylamino)-3-[(2S)-butan-2-yl]-2-oxopyrrolidin-1-yl}-N-{(2S,3R)-3-hydroxy-4-[(3-methoxybenzyl)amino]-1-phenylbutan-2-yl}-4-phenylbutanamide(Non-covalent)

PB7.1: 24 residues within 4Å: Chain A: S.72, G.73, Q.74, G.75, L.92, D.94, G.96, S.97, P.132, Y.133, T.134, Q.135, F.170, I.172, W.177, I.180, I.188, R.190, Y.260, D.290, G.292, T.293, T.294, R.297 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.92, A:Y.133, A:Y.133, A:T.134, A:Q.135, A:Q.135, A:F.170, A:I.172, A:W.177, A:I.180, A:Y.260 Hydrogen bonds: A:G.73, A:G.96, A:G.96, A:T.134, A:Q.135, A:G.292, A:T.294, A:T.294 Water bridges: A:N.295 pi-Stacking: A:Y.133

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, L.A. et al., Synthesis and in vivo evaluation of cyclic diaminopropane BACE-1 inhibitors. Bioorg.Med.Chem.Lett. (2011)

Release Date

2011-08-31

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-secretase 1

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