SMTL ID : 3r0w.1

Crystal Structures of Multidrug-resistant HIV-1 Protease in Complex with Mechanism-Based Aspartyl Protease Inhibitors.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x RSY: N-[(2R)-1-{[(2S,3S)-5-{[(2R)-1-{[(2S)-1-amino-4-methyl-1-oxopentan-2-yl]amino}-3-chloro-1-oxopropan-2-yl]amino}-3-hydroxy-5-oxo-1-phenylpentan-2-yl]amino}-3-methyl-1-oxobutan-2-yl]pyridine-2-carboxamide(Non-covalent)

RSY.1: 16 residues within 4Å: Chain A: N.25, G.27, A.28, D.29, V.32, T.80, V.84 Chain B: N.25, G.27, I.47, G.48, I.50, T.80, P.81, T.82, V.84 15 PLIP interactions: 6 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:V.32, A:V.32, A:V.84, B:I.50, B:P.81, B:P.81, B:T.82, B:V.84 Hydrogen bonds: A:N.25, A:G.27, B:N.25, B:G.48 Water bridges: A:D.29, B:D.29, B:G.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yedidi, R.S. et al., Crystal structures of multidrug-resistant HIV-1 protease in complex with two potent anti-malarial compounds. Biochem.Biophys.Res.Commun. (2012)

Release Date

2012-04-04

Peptides

Multidrug-resistant clinical isolate 769 HIV-1 Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Multidrug-resistant clinical isolate 769 HIV-1 Protease

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