SMTL ID : 3u1y.3 (2 other biounits)

Potent Inhibitors of LpxC for the Treatment of Gram-Negative Infections

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.78, H.237, D.241 Ligands: 03I.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241 ZN.3: 4 residues within 4Å: Chain A: K.3, E.123 Chain B: K.3, E.123 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.123, A:E.123, B:E.123, B:E.123 ZN.4: 5 residues within 4Å: Chain B: H.78, T.190, H.237, D.241 Ligands: 03I.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.78, B:H.237, B:D.241, B:D.241

2 x 03I: (2R)-N-hydroxy-2-methyl-2-(methylsulfonyl)-4-{4'-[3-(morpholin-4-yl)propoxy]biphenyl-4-yl}butanamide(Non-covalent)

03I.2: 20 residues within 4Å: Chain A: L.18, M.62, E.77, H.78, T.190, F.191, G.192, F.193, M.194, I.197, L.200, A.206, G.209, V.216, L.223, H.237, K.238, D.241, H.264 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.18, A:T.190, A:I.197, A:I.197, A:A.206, A:V.216 Hydrogen bonds: A:M.62 03I.5: 19 residues within 4Å: Chain B: L.18, M.62, E.77, H.78, T.190, F.191, G.192, F.193, I.197, L.200, A.206, G.209, V.216, L.223, H.237, K.238, D.241, H.264 Ligands: ZN.4 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:L.18, B:T.190, B:I.197, B:I.197, B:A.206, B:V.216 Hydrogen bonds: B:M.62, B:E.77, B:T.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brown, M.F. et al., Potent inhibitors of LpxC for the treatment of Gram-negative infections. J.Med.Chem. (2012)

Release Date

2012-01-04

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

Related Entries With Identical Sequence