SMTL ID : 6i46.1

Structure of P. aeruginosa LpxC with compound 8: (2RS)-4-(5-(2-Fluoro-4-methoxyphenyl)-2-oxooxazol-3(2H)-yl)-N-hydroxy-2-methyl-2-(methylsulfonyl)butanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: E.77, H.78, T.190, H.237, D.241 Ligands: H2N.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x H2N: (2~{R})-4-[5-(2-fluoranyl-4-methoxy-phenyl)-2-oxidanylidene-1,3-oxazol-3-yl]-2-methyl-2-methylsulfonyl-~{N}-oxidanyl-butanamide(Non-covalent)

H2N.2: 23 residues within 4Å: Chain A: L.18, H.19, M.62, S.63, T.75, E.77, H.78, T.190, F.191, G.192, M.194, I.197, L.200, A.206, G.209, S.210, A.214, V.216, H.237, K.238, D.241, H.264 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.200, A:A.206, A:A.214 Hydrogen bonds: A:E.77, A:H.264

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: R.189, V.211, E.212, N.224, E.225, D.226, G.227 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.189, A:E.212, A:E.212, A:N.224, A:D.226, A:D.226, A:G.227 Water bridges: A:E.225, A:D.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Surivet, J.P. et al., Discovery of Novel Inhibitors of LpxC Displaying Potent in Vitro Activity against Gram-Negative Bacteria. J.Med.Chem. (2020)

Release Date

2019-12-18

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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