SMTL ID : 7ci6.2 (1 other biounit)

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x FY6: (1S)-1-[1-[3-(4-chlorophenyl)propyl]imidazol-2-yl]ethanol(Non-covalent)

FY6.1: 13 residues within 4Å: Chain A: L.18, M.62, E.77, H.78, T.190, F.191, G.192, L.200, A.206, H.237, D.241, H.264 Ligands: ZN.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.18, A:L.18, A:T.190, A:L.200 pi-Stacking: A:F.191

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.78, T.190, H.237, D.241 Ligands: FY6.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.41 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamada, Y. et al., Fragment-Based Discovery of Novel Non-Hydroxamate LpxC Inhibitors with Antibacterial Activity. J.Med.Chem. (2020)

Release Date

2020-12-02

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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