SMTL ID : 7den.1

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.78, H.237, D.241 Ligands: H4R.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x H4R: 4-[(1~{R},5~{S})-6-[2-[4-[3-[[2-[(1~{S})-1-oxidanylethyl]imidazol-1-yl]methyl]-1,2-oxazol-5-yl]phenyl]ethynyl]-3-azabicyclo[3.1.0]hexan-3-yl]butanoic acid(Non-covalent)

H4R.2: 19 residues within 4Å: Chain A: L.18, H.19, M.62, E.77, H.78, T.190, F.191, G.192, M.194, I.197, A.206, G.209, S.210, A.214, V.216, H.237, D.241, H.264 Ligands: ZN.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.18, A:L.18, A:T.190, A:I.197, A:I.197, A:A.206, A:A.214, A:V.216 Hydrogen bonds: A:E.77, A:E.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ushiyama, F. et al., Lead optimization of 2-hydroxymethyl imidazoles as non-hydroxamate LpxC inhibitors: Discovery of TP0586532. Bioorg.Med.Chem. (2020)

Release Date

2021-01-13

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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