SMTL ID : 4okg.2 (1 other biounit)

LpxC from P.aeruginosa with the inhibitor 6-(benzimidazol-1-yl)-5-[4-[2-[6-[(4-methylpiperazin-1-yl)methyl]-3-pyridyl]ethynyl]phenyl]pyridine-3-carbohydroxamic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.06 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.78, H.237, D.241 Ligands: 2SZ.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x 2SZ: 6-(1H-benzimidazol-1-yl)-N-hydroxy-5-[4-({6-[(4-methylpiperazin-1-yl)methyl]pyridin-3-yl}ethynyl)phenyl]pyridine-3-carboxamide(Non-covalent)

2SZ.2: 18 residues within 4Å: Chain A: H.19, M.62, E.77, H.78, T.190, F.191, I.197, L.200, R.201, A.206, G.209, S.210, A.214, V.216, H.237, D.241, H.264 Ligands: ZN.1 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:T.190, A:I.197, A:I.197, A:I.197, A:L.200, A:L.200, A:A.206, A:A.214, A:V.216 Hydrogen bonds: A:M.62, A:R.201 Water bridges: A:D.196, A:K.238, A:K.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, N. et al., Overexpression of Pseudomonas aeruginosa LpxC in the Presence of an Inhibitor in an acrB Deletion Escherichia coli strain for Structural Studies. Protein Express.Purif. (2014)

Release Date

2014-09-24

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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