SMTL ID : 7ci4.2 (1 other biounit)

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x FXU: (2R)-2-azanyl-4-methylsulfonyl-N-[3-(trifluoromethyloxy)phenyl]butanamide(Non-covalent)

FXU.1: 16 residues within 4Å: Chain A: L.18, M.62, E.77, H.78, I.102, T.190, G.192, I.197, A.206, N.213, A.214, H.237, K.238, D.241, H.264 Ligands: ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.18, A:L.18, A:I.102, A:T.190 Hydrogen bonds: A:E.77, A:H.264 Water bridges: A:M.62

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.78, H.237, D.241 Ligands: FXU.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241, A:D.241

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: D.277, D.279 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.277, A:D.279, H2O.1, H2O.1

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: R.41, D.70, K.72, S.98 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamada, Y. et al., Fragment-Based Discovery of Novel Non-Hydroxamate LpxC Inhibitors with Antibacterial Activity. J.Med.Chem. (2020)

Release Date

2020-12-02

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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