SMTL ID : 7ci5.1 (3 other biounits)

Crystal structure of P.aeruginosa LpxC in complex with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x FXX: (3R)-3-azanyl-4-oxidanylidene-4-[[3-(trifluoromethyloxy)phenyl]amino]butanoic acid(Non-covalent)

FXX.1: 16 residues within 4Å: Chain A: L.18, M.62, E.77, H.78, I.102, T.190, G.192, I.197, G.209, N.213, A.214, H.237, K.238, D.241, H.264 Ligands: ZN.3 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.18, A:L.18, A:I.102, A:T.190 Hydrogen bonds: A:E.77, A:H.264 Water bridges: A:H.264 Salt bridges: A:K.238, A:H.264

1 x MPO: 3[N-MORPHOLINO]PROPANE SULFONIC ACID(Non-covalent)

MPO.2: 5 residues within 4Å: Chain A: R.41, D.70, V.71, K.72, S.98 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.72 Salt bridges: A:R.41

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: E.77, H.78, H.237, D.241 Ligands: FXX.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.78, A:H.237, A:D.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yamada, Y. et al., Fragment-Based Discovery of Novel Non-Hydroxamate LpxC Inhibitors with Antibacterial Activity. J.Med.Chem. (2020)

Release Date

2020-12-02

Peptides

UDP-3-O-acyl-N-acetylglucosamine deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-3-O-acyl-N-acetylglucosamine deacetylase

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