- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.68 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x WRO: 2,6-dioxo-5-{2-[3-(trifluoromethyl)phenyl]ethyl}-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 4 residues within 4Å:- Chain A: C.32, A.35, S.36, P.280
2 PLIP interactions:2 interactions with chain A- Water bridges: A:S.37, A:P.280
GOL.3: 6 residues within 4Å:- Chain A: I.172, R.239, R.240
- Chain B: K.215, Q.216, F.218
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.216, A:R.240, A:R.240
GOL.4: 6 residues within 4Å:- Chain A: K.215, Q.216, F.218
- Chain B: I.172, R.239, R.240
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:R.240, B:R.240
- Water bridges: A:Q.216, A:Q.216, A:Q.216
GOL.5: 2 residues within 4Å:- Chain A: Y.238, P.242
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:P.242
- Water bridges: A:Y.238
GOL.6: 9 residues within 4Å:- Chain A: S.130, Q.139, P.167, P.168, N.195, S.196, G.198, G.220
- Ligands: WRO.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.130, A:Q.139
- Water bridges: A:G.198, A:N.199, A:G.220
GOL.7: 3 residues within 4Å:- Chain A: L.5, N.6, R.306
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.6, A:R.306
GOL.11: 9 residues within 4Å:- Chain B: S.130, Q.139, P.167, P.168, N.195, S.196, G.198, G.220
- Ligands: WRO.10
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:S.130, B:S.196
- Water bridges: B:G.198, B:N.199, B:G.220, B:G.220
GOL.12: 3 residues within 4Å:- Chain B: Y.238, R.239, P.242
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.239, B:P.242
GOL.13: 1 residues within 4Å:- Chain B: N.183
2 PLIP interactions:2 interactions with chain B- Water bridges: B:N.183, B:N.183
GOL.14: 6 residues within 4Å:- Chain B: H.10, Y.90, K.93, P.94, K.121, G.122
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:H.10, B:K.93, B:G.122
GOL.15: 5 residues within 4Å:- Chain B: F.62, V.202, I.203, D.204, V.211
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.204, B:D.204
GOL.16: 6 residues within 4Å:- Chain A: I.312
- Chain B: D.204, S.207, S.209, V.210, V.211
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.207, B:S.209
- Water bridges: B:V.211
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.8: 22 residues within 4Å:- Chain A: A.19, A.20, G.21, K.44, S.45, Y.59, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, G.272, T.273
- Ligands: WRO.1
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:Y.59, A:Y.59
- Hydrogen bonds: A:A.20, A:S.45, A:S.45, A:S.45, A:K.165, A:K.165, A:N.195, A:G.223, A:G.251, A:G.272, A:T.273, A:T.273
- Water bridges: A:S.98, A:G.250, A:V.252, A:V.252, A:V.252
FMN.17: 23 residues within 4Å:- Chain B: A.19, A.20, G.21, K.44, S.45, Y.59, N.68, M.70, L.72, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, G.272, T.273
- Ligands: WRO.10
21 PLIP interactions:21 interactions with chain B- Hydrophobic interactions: B:Y.59, B:Y.59
- Hydrogen bonds: B:A.20, B:S.45, B:S.45, B:S.45, B:N.128, B:K.165, B:K.165, B:N.195, B:G.223, B:G.251, B:G.272, B:T.273, B:T.273
- Water bridges: B:A.20, B:S.98, B:G.250, B:V.252, B:V.252, B:V.252
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-095. To be Published
- Release Date
- 2013-11-27
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.68 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x WRO: 2,6-dioxo-5-{2-[3-(trifluoromethyl)phenyl]ethyl}-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 1 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with MII-3-095. To be Published
- Release Date
- 2013-11-27
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B