- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W86: 5-{4-[4-(methoxycarbonyl)phenyl]butyl}-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 4 residues within 4Å:- Chain A: C.32, A.35, S.36, P.280
Ligand excluded by PLIPGOL.3: 6 residues within 4Å:- Chain A: K.215, F.218
- Chain B: I.172, R.239, R.240
- Ligands: GOL.32
Ligand excluded by PLIPGOL.4: 8 residues within 4Å:- Chain A: S.130, P.167, P.168, N.195, S.196, G.198, G.220
- Ligands: W86.1
Ligand excluded by PLIPGOL.5: 6 residues within 4Å:- Chain A: F.62, V.202, I.203, D.204, V.211
- Ligands: NCO.28
Ligand excluded by PLIPGOL.6: 2 residues within 4Å:- Chain A: E.278, R.285
Ligand excluded by PLIPGOL.7: 4 residues within 4Å:- Chain A: Y.59, M.70, Q.276
- Ligands: CAC.10
Ligand excluded by PLIPGOL.8: 8 residues within 4Å:- Chain A: V.11, A.13, Y.90, S.91, K.92, K.93, P.94
- Ligands: EDO.19
Ligand excluded by PLIPGOL.9: 3 residues within 4Å:- Chain A: P.242, D.243, K.244
Ligand excluded by PLIPGOL.30: 6 residues within 4Å:- Chain A: I.172, R.239, R.240
- Chain B: K.215, Q.216, F.218
Ligand excluded by PLIPGOL.31: 5 residues within 4Å:- Chain B: S.130, Q.139, N.195, S.196
- Ligands: W86.29
Ligand excluded by PLIPGOL.32: 4 residues within 4Å:- Chain A: Q.216
- Chain B: R.239, R.240
- Ligands: GOL.3
Ligand excluded by PLIPGOL.33: 4 residues within 4Å:- Chain B: F.62, V.202, D.204, V.211
Ligand excluded by PLIPGOL.34: 3 residues within 4Å:- Chain B: Y.59, M.70, Q.276
Ligand excluded by PLIPGOL.35: 5 residues within 4Å:- Chain B: L.5, N.6, E.303, R.306
- Ligands: GOL.36
Ligand excluded by PLIPGOL.36: 6 residues within 4Å:- Chain B: P.242, D.243, K.244, L.245
- Ligands: GOL.35, GOL.38
Ligand excluded by PLIPGOL.37: 5 residues within 4Å:- Chain B: V.11, Y.90, S.91, K.93, P.94
Ligand excluded by PLIPGOL.38: 3 residues within 4Å:- Chain B: Y.238, P.242
- Ligands: GOL.36
Ligand excluded by PLIPGOL.39: 1 residues within 4Å:- Chain B: A.49
Ligand excluded by PLIP- 2 x CAC: CACODYLATE ION(Non-covalent)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
FMN.12: 24 residues within 4Å:- Chain A: A.19, A.20, G.21, K.44, S.45, Y.59, S.66, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, V.271, G.272, T.273
- Ligands: W86.1
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:Y.59, A:Y.59
- Hydrogen bonds: A:A.20, A:S.45, A:S.45, A:S.45, A:K.165, A:K.165, A:N.195, A:G.223, A:G.251, A:G.272, A:T.273
- Water bridges: A:A.20, A:S.98, A:G.250, A:G.250, A:V.252, A:V.252
FMN.40: 23 residues within 4Å:- Chain B: A.19, A.20, G.21, K.44, S.45, Y.59, N.68, M.70, N.128, K.165, V.194, N.195, S.196, G.222, G.223, I.226, C.249, G.250, G.251, V.271, G.272, T.273
- Ligands: W86.29
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:Y.59, B:Y.59
- Hydrogen bonds: B:A.20, B:S.45, B:S.45, B:S.45, B:K.165, B:K.165, B:N.195, B:G.223, B:G.251, B:G.272, B:T.273
- Water bridges: B:A.20, B:S.98, B:S.98, B:G.250, B:G.250, B:V.252, B:V.252
- 21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.13: 4 residues within 4Å:- Chain A: R.239, G.307, V.309, T.311
Ligand excluded by PLIPEDO.14: 4 residues within 4Å:- Chain A: Q.119, E.120, K.121, G.122
Ligand excluded by PLIPEDO.15: 3 residues within 4Å:- Chain A: P.186, L.187
- Ligands: EDO.25
Ligand excluded by PLIPEDO.16: 3 residues within 4Å:- Chain A: P.50, R.51, D.52
Ligand excluded by PLIPEDO.17: 3 residues within 4Å:- Chain A: F.62, P.63, E.277
Ligand excluded by PLIPEDO.18: 4 residues within 4Å:- Chain A: G.298, Y.299, R.300, E.304
Ligand excluded by PLIPEDO.19: 8 residues within 4Å:- Chain A: A.13, S.36, S.37, S.38, G.39, K.92, K.93
- Ligands: GOL.8
Ligand excluded by PLIPEDO.20: 5 residues within 4Å:- Chain A: E.256, R.296, K.297
- Chain B: A.205, E.206
Ligand excluded by PLIPEDO.21: 3 residues within 4Å:- Chain A: L.64, K.224
- Chain B: L.64
Ligand excluded by PLIPEDO.22: 4 residues within 4Å:- Chain A: E.303, E.304, R.308
- Ligands: EDO.23
Ligand excluded by PLIPEDO.23: 5 residues within 4Å:- Chain A: Y.299, E.304, R.308
- Ligands: CAC.11, EDO.22
Ligand excluded by PLIPEDO.24: 3 residues within 4Å:- Chain A: N.183, R.240, P.242
Ligand excluded by PLIPEDO.25: 5 residues within 4Å:- Chain A: S.155, L.156, G.159, L.187
- Ligands: EDO.15
Ligand excluded by PLIPEDO.26: 2 residues within 4Å:- Chain A: S.48, A.49
Ligand excluded by PLIPEDO.41: 3 residues within 4Å:- Chain B: E.105, V.108, A.109
Ligand excluded by PLIPEDO.42: 5 residues within 4Å:- Chain B: S.48, P.50, G.76, F.77, D.78
Ligand excluded by PLIPEDO.43: 3 residues within 4Å:- Chain B: F.62, P.63, E.277
Ligand excluded by PLIPEDO.44: 5 residues within 4Å:- Chain B: Y.253, A.274, E.277, E.278, R.285
Ligand excluded by PLIPEDO.45: 3 residues within 4Å:- Chain A: L.64
- Chain B: L.64, K.224
Ligand excluded by PLIPEDO.46: 1 residues within 4Å:- Chain B: E.56
Ligand excluded by PLIPEDO.47: 4 residues within 4Å:- Chain B: S.85, D.86, H.88, K.121
Ligand excluded by PLIP- 2 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
NCO.27: 4 residues within 4Å:- Chain A: Q.276, E.277, E.278, G.279
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.276, A:Q.276, A:E.277, A:E.277
NCO.28: 2 residues within 4Å:- Chain A: D.204
- Ligands: GOL.5
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.204, A:D.204
- Water bridges: A:E.206, A:S.207
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with SH-1-96. To be Published
- Release Date
- 2014-03-12
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x W86: 5-{4-[4-(methoxycarbonyl)phenyl]butyl}-2,6-dioxo-1,2,3,6-tetrahydropyrimidine-4-carboxylic acid(Non-covalent)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CAC: CACODYLATE ION(Non-covalent)
- 2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)
- 21 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x NCO: COBALT HEXAMMINE(III)(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Inaoka, D.K. et al., Structure of Trypanosoma cruzi dihydroorotate dehydrogenase in complex with SH-1-96. To be Published
- Release Date
- 2014-03-12
- Peptides
- Dihydroorotate dehydrogenase (fumarate): AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B