SMTL ID : 3x1h.2 (1 other biounit)

hPPARgamma Ligand binding domain in complex with 5-oxo-tricosahexaenoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 5OX: (7E,11Z,14Z,17Z,20Z)-5-oxotricosa-7,11,14,17,20-pentaenoic acid(Covalent)

5OX.1: 14 residues within 4Å: Chain A: I.80, G.83, C.84, R.87, S.88, I.125, L.129, L.132, V.138, L.139, I.140, S.141, M.147, M.163 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.80, A:R.87, A:L.129, A:V.138, A:V.138, A:I.140, A:I.140 Salt bridges: A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egawa, D. et al., Characterization of covalent bond formation between PPAR gamma and oxo-fatty acids. Bioconjug.Chem. (2015)

Release Date

2015-04-08

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisome proliferator-activated receptor gamma

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