SMTL ID : 3x1i.1 (1 other biounit)

hPPARgamma Ligand binding domain in complex with 6-oxo-tetracosahexaenoic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 66B: (8E,12Z,15Z,18Z,21Z)-6-oxotetracosa-8,12,15,18,21-pentaenoic acid(Covalent)

66B.1: 17 residues within 4Å: Chain A: G.83, C.84, R.87, S.88, H.122, I.125, Y.126, L.129, L.132, L.139, I.140, S.141, E.142, M.163, H.248, L.268, Y.272 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:R.87, A:I.125, A:Y.126, A:L.132, A:I.140, A:I.140, A:E.142 Hydrogen bonds: A:S.88, A:S.88, A:Y.272 Salt bridges: A:H.122, A:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egawa, D. et al., Characterization of covalent bond formation between PPAR gamma and oxo-fatty acids. Bioconjug.Chem. (2015)

Release Date

2015-04-08

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

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