SMTL ID : 5azv.1 (1 other biounit)

Crystal structure of hPPARgamma ligand binding domain complexed with 17-oxoDHA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x 4M5: (4~{Z},7~{Z},10~{Z},13~{Z},19~{Z})-17-oxidanylidenedocosa-4,7,10,13,19-pentaenoic acid(Covalent)

4M5.1: 13 residues within 4Å: Chain A: I.80, F.81, G.83, C.84, Q.85, R.87, S.88, V.138, I.140, S.141, E.142, H.248, Y.272 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.81, A:Q.85, A:R.87, A:V.138, A:I.140, A:I.140 Hydrogen bonds: A:S.141, A:E.142 Water bridges: A:K.166 Salt bridges: A:R.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Egawa, D. et al., 17-OxoDHA Is a PPAR alpha/gamma Dual Covalent Modifier and Agonist. Acs Chem.Biol. (2016)

Release Date

2016-07-06

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peroxisome proliferator-activated receptor gamma

Related Entries With Identical Sequence