SMTL ID : 5wqx.1

Covalent bond formation of synthetic ligand with hPPARg-LBD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-dimer

Ligands

1 x T65: 2-[E-(E-2-oxidanylidenehexadec-5-enylidene)amino]ethanoic acid(Covalent)

T65.1: 16 residues within 4Å: Chain A: I.80, F.81, C.84, Q.85, R.87, S.88, Y.126, V.138, I.140, S.141, F.162, M.163, H.248, L.252, L.268, Y.272 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:R.87, A:V.138, A:I.140, A:I.140, A:F.162, A:F.162 Hydrogen bonds: A:Q.85, A:S.88, A:Y.126, A:Y.272 Salt bridges: A:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kojima, H. et al., On-site reaction for PPAR gamma modification using a specific bifunctional ligand. Bioorg. Med. Chem. (2017)

Release Date

2017-11-22

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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