SMTL ID : 8hhq.1

Covalent bond formation between cysteine of PPARg-LBD and iodoacetic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x GOA: GLYCOLIC ACID(Covalent)

GOA.1: 6 residues within 4Å: Chain A: C.84, Q.85, S.88, Y.126, K.166, H.248 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.88, A:S.88, A:Y.126 Water bridges: A:Q.85 Salt bridges: A:K.166, A:H.248 GOA.2: 5 residues within 4Å: Chain B: C.84, Y.126, M.163, K.166, H.248 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.166, B:H.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kojima, H. et al., Covalent Modifier Discovery Using Hydrogen/Deuterium Exchange-Mass Spectrometry. J.Med.Chem. (2023)

Release Date

2023-09-20

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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