SMTL ID : 7efq.1

Crystal structure of hPPARgamma ligand binding domain complexed with rosiglitazone-based fluorescence probe

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

1 x J3F: (5S)-5-[[4-[2-[[7-(diethylamino)-2-oxidanylidene-chromen-4-yl]-methyl-amino]ethoxy]phenyl]methyl]-1,3-thiazolidine-2,4-dione(Non-covalent)

J3F.1: 26 residues within 4Å: Chain A: L.54, E.58, R.79, I.80, F.81, G.83, C.84, Q.85, R.87, S.88, H.122, I.125, Y.126, L.129, V.138, I.140, S.141, M.147, L.152, F.162, M.163, K.166, H.248, L.252, L.268, Y.272 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.54, A:I.80, A:R.87, A:I.140, A:I.140, A:F.162 Hydrogen bonds: A:Q.85, A:S.88, A:H.122, A:S.141, A:H.248, A:Y.272 Water bridges: A:E.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshikawa, C. et al., Synthesis of a Coumarin-Based PPAR gamma Fluorescence Probe for Competitive Binding Assay. Int J Mol Sci (2021)

Release Date

2021-05-12

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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