SMTL ID : 4f4s.1 (1 other biounit)

Structure of the yeast F1Fo ATPase c10 ring with bound oligomycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-10-mer

Ligands

6 x EFO: Oligomycin A(Non-covalent)

EFO.1: 11 residues within 4Å: Chain B: A.56, L.57, A.60, F.64 Chain C: I.52, F.55, A.56, E.59, L.63, L.66 Ligands: EFO.2 12 PLIP interactions: 7 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:I.52, C:F.55, C:A.56, C:E.59, C:L.63, C:L.66, B:A.56, B:L.57, B:A.60, B:F.64, B:F.64 Hydrogen bonds: C:E.59 EFO.2: 13 residues within 4Å: Chain A: L.53, A.56, L.57, A.60, F.64 Chain B: I.52, F.55, A.56, E.59, A.60, L.63, L.66 Ligands: EFO.1 12 PLIP interactions: 5 interactions with chain A, 7 interactions with chain B Hydrophobic interactions: A:L.53, A:A.56, A:L.57, A:A.60, A:F.64, B:I.52, B:A.56, B:E.59, B:A.60, B:L.63, B:L.66 Hydrogen bonds: B:E.59 EFO.3: 11 residues within 4Å: Chain D: A.56, L.57, A.60, F.64 Chain E: L.19, I.52, F.55, A.56, E.59, A.60, L.63 11 PLIP interactions: 4 interactions with chain D, 7 interactions with chain E Hydrophobic interactions: D:A.56, D:L.57, D:A.60, D:F.64, E:L.19, E:I.52, E:A.56, E:E.59, E:A.60, E:L.63 Hydrogen bonds: E:E.59 EFO.4: 11 residues within 4Å: Chain G: A.56, L.57, A.60, F.64 Chain H: I.52, F.55, A.56, E.59, L.63, L.66 Ligands: EFO.5 12 PLIP interactions: 5 interactions with chain G, 7 interactions with chain H Hydrophobic interactions: G:A.56, G:L.57, G:A.60, G:F.64, G:F.64, H:I.52, H:F.55, H:A.56, H:E.59, H:L.63, H:L.66 Hydrogen bonds: H:E.59 EFO.5: 13 residues within 4Å: Chain F: L.53, A.56, L.57, A.60, F.64 Chain G: I.52, F.55, A.56, E.59, A.60, L.63, L.66 Ligands: EFO.4 12 PLIP interactions: 5 interactions with chain F, 7 interactions with chain G Hydrophobic interactions: F:L.53, F:A.56, F:L.57, F:A.60, F:F.64, G:I.52, G:A.56, G:E.59, G:A.60, G:L.63, G:L.66 Hydrogen bonds: G:E.59 EFO.6: 11 residues within 4Å: Chain I: A.56, L.57, A.60, F.64 Chain J: L.19, I.52, F.55, A.56, E.59, A.60, L.63 11 PLIP interactions: 4 interactions with chain I, 7 interactions with chain J Hydrophobic interactions: I:A.56, I:L.57, I:A.60, I:F.64, J:L.19, J:I.52, J:A.56, J:E.59, J:A.60, J:L.63 Hydrogen bonds: J:E.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Symersky, J. et al., Oligomycin frames a common drug-binding site in the ATP synthase. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-08-15

Peptides

ATP synthase subunit 9, mitochondrial: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit 9, mitochondrial

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