SMTL ID : 5bqj.1 (1 other biounit)

Structure of the yeast F1FO ATPase C10 ring with 21-hydroxy-oligomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-10-mer

Ligands

6 x E21: 21-hydroxy-oligomycin(Non-covalent)

E21.1: 11 residues within 4Å: Chain B: A.56, L.57, A.60, F.64 Chain C: I.52, F.55, A.56, E.59, L.63, L.66 Ligands: E21.2 10 PLIP interactions: 5 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:I.52, C:F.55, C:A.56, C:L.63, C:L.66, B:A.56, B:L.57, B:A.60, B:F.64, B:F.64 E21.2: 12 residues within 4Å: Chain A: L.53, A.56, L.57, A.60, F.64 Chain B: I.52, F.55, A.56, E.59, G.62, L.63 Ligands: E21.1 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.53, A:A.56, A:L.57, A:A.60, A:F.64, A:F.64, B:I.52, B:A.56, B:L.63 E21.3: 12 residues within 4Å: Chain D: A.56, L.57, A.60, F.64 Chain E: L.19, I.52, F.55, A.56, E.59, A.60, G.62, L.63 9 PLIP interactions: 5 interactions with chain E, 4 interactions with chain D Hydrophobic interactions: E:L.19, E:I.52, E:A.56, E:E.59, E:A.60, D:A.56, D:L.57, D:A.60, D:F.64 E21.4: 11 residues within 4Å: Chain G: A.56, L.57, A.60, F.64 Chain H: I.52, F.55, A.56, E.59, L.63, L.66 Ligands: E21.5 10 PLIP interactions: 5 interactions with chain G, 5 interactions with chain H Hydrophobic interactions: G:A.56, G:L.57, G:A.60, G:F.64, G:F.64, H:I.52, H:F.55, H:A.56, H:L.63, H:L.66 E21.5: 12 residues within 4Å: Chain F: L.53, A.56, L.57, A.60, F.64 Chain G: I.52, F.55, A.56, E.59, G.62, L.63 Ligands: E21.4 9 PLIP interactions: 6 interactions with chain F, 3 interactions with chain G Hydrophobic interactions: F:L.53, F:A.56, F:L.57, F:A.60, F:F.64, F:F.64, G:I.52, G:A.56, G:L.63 E21.6: 12 residues within 4Å: Chain I: A.56, L.57, A.60, F.64 Chain J: L.19, I.52, F.55, A.56, E.59, A.60, G.62, L.63 9 PLIP interactions: 5 interactions with chain J, 4 interactions with chain I Hydrophobic interactions: J:L.19, J:I.52, J:A.56, J:E.59, J:A.60, I:A.56, I:L.57, I:A.60, I:F.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, D.M., Structure of the yeast F1FO ATPase C10 ring with 21-hydroxy-oligomycin. To be Published

Release Date

2015-08-26

Peptides

ATP synthase subunit 9, mitochondrial: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
A

G
B

H
C

I
D

J
E

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit 9, mitochondrial

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