SMTL ID : 5bqa.2 (1 other biounit)

Structure of the yeast F1FO ATPase C10 ring with oligomycin C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-10-mer

Ligands

6 x EF4: oligomycin C(Non-covalent)

EF4.1: 12 residues within 4Å: Chain A: L.53, A.56, L.57, A.60, F.64 Chain B: I.52, F.55, A.56, E.59, A.60, G.62, L.63 14 PLIP interactions: 6 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:L.53, A:A.56, A:L.57, A:A.60, A:F.64, A:F.64, B:I.52, B:A.56, B:E.59, B:A.60, B:L.63, B:L.63 Hydrogen bonds: B:E.59, B:L.63 EF4.2: 12 residues within 4Å: Chain B: L.53, A.56, L.57, A.60, F.64 Chain C: L.19, I.52, F.55, A.56, E.59, L.63, L.66 12 PLIP interactions: 7 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:L.19, C:I.52, C:A.56, C:E.59, C:L.66, B:L.53, B:A.56, B:F.64, B:F.64, B:F.64 Hydrogen bonds: C:E.59, C:E.59 EF4.3: 11 residues within 4Å: Chain D: L.53, A.56, L.57, A.60, F.64 Chain E: L.19, I.52, F.55, A.56, E.59, L.63 12 PLIP interactions: 7 interactions with chain E, 5 interactions with chain D Hydrophobic interactions: E:L.19, E:I.52, E:A.56, E:E.59, D:L.53, D:A.56, D:L.57, D:A.60, D:F.64 Hydrogen bonds: E:E.59, E:E.59, E:L.63 EF4.4: 12 residues within 4Å: Chain F: L.53, A.56, L.57, A.60, F.64 Chain G: I.52, F.55, A.56, E.59, A.60, G.62, L.63 14 PLIP interactions: 8 interactions with chain G, 6 interactions with chain F Hydrophobic interactions: G:I.52, G:A.56, G:E.59, G:A.60, G:L.63, G:L.63, F:L.53, F:A.56, F:L.57, F:A.60, F:F.64, F:F.64 Hydrogen bonds: G:E.59, G:L.63 EF4.5: 12 residues within 4Å: Chain G: L.53, A.56, L.57, A.60, F.64 Chain H: L.19, I.52, F.55, A.56, E.59, L.63, L.66 12 PLIP interactions: 7 interactions with chain H, 5 interactions with chain G Hydrophobic interactions: H:L.19, H:I.52, H:A.56, H:E.59, H:L.66, G:L.53, G:A.56, G:F.64, G:F.64, G:F.64 Hydrogen bonds: H:E.59, H:E.59 EF4.6: 11 residues within 4Å: Chain I: L.53, A.56, L.57, A.60, F.64 Chain J: L.19, I.52, F.55, A.56, E.59, L.63 12 PLIP interactions: 7 interactions with chain J, 5 interactions with chain I Hydrophobic interactions: J:L.19, J:I.52, J:A.56, J:E.59, I:L.53, I:A.56, I:L.57, I:A.60, I:F.64 Hydrogen bonds: J:E.59, J:E.59, J:L.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, D.M., Structure of the yeast F1FO ATPase C10 ring with oligomycin C. To be Published

Release Date

2015-08-26

Peptides

ATP synthase subunit 9, mitochondrial: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

F
K

G
L

H
M

I
N

J
O

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit 9, mitochondrial

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