SMTL ID : 6cp5.1

Monomer yeast ATP synthase Fo reconstituted in nanodisc with inhibitor of oligomycin bound generated from focused refinement.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-10-1-1-1-1-1-1-mer

Ligands

4 x EFO: Oligomycin A(Non-covalent)

EFO.1: 10 residues within 4Å: Chain C: L.53, A.56, L.57, A.60, F.64 Chain D: A.56, E.59, L.63, L.66 Ligands: EFO.2 7 PLIP interactions: 2 interactions with chain D, 5 interactions with chain C Hydrophobic interactions: D:A.56, D:L.66, C:L.53, C:L.57, C:L.57, C:A.60, C:F.64 EFO.2: 11 residues within 4Å: Chain D: L.53, A.56, L.57, A.60, F.64 Chain E: I.52, E.59, L.63, L.66 Ligands: EFO.1, EFO.3 6 PLIP interactions: 2 interactions with chain E, 4 interactions with chain D Hydrophobic interactions: E:I.52, E:L.63, D:L.53, D:L.57, D:F.64, D:F.64 EFO.3: 9 residues within 4Å: Chain E: L.57, A.60, F.64 Chain F: I.52, F.55, A.56, L.63, L.66 Ligands: EFO.2 4 PLIP interactions: 1 interactions with chain E, 3 interactions with chain F Hydrophobic interactions: E:F.64, F:I.52, F:F.55, F:A.56 EFO.4: 6 residues within 4Å: Chain F: L.53, L.57, A.60, F.64 Chain G: E.59, L.63 6 PLIP interactions: 5 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: F:L.53, F:L.57, F:L.57, F:F.64, F:F.64, G:L.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Srivastava, A.P. et al., High-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane. Science (2018)

Release Date

2018-04-11

Peptides

ATP synthase subunit 9, mitochondrial: ABCDEFGHIJ
ATP synthase protein 8: K
ATP synthase subunit a: L
ATP synthase subunit 4, mitochondrial: M
ATP synthase subunit d, mitochondrial: N
ATP synthase subunit f, mitochondrial: O
ATP synthase subunit J, mitochondrial: P

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

F
P

G
Q

H
R

I
S

J
T

K
8

L
X

M
Z

N
7

O
U

P
J

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit 9, mitochondrial

ATP synthase protein 8

ATP synthase subunit a

ATP synthase subunit 4, mitochondrial

ATP synthase subunit d, mitochondrial

ATP synthase subunit f, mitochondrial

ATP synthase subunit J, mitochondrial

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