SMTL ID : 5bqj.2 (1 other biounit)

Structure of the yeast F1FO ATPase C10 ring with 21-hydroxy-oligomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-10-mer

Ligands

8 x E21: 21-hydroxy-oligomycin(Non-covalent)

E21.1: 14 residues within 4Å: Chain A: I.52, F.55, A.56, E.59, A.60, G.62, L.63 Chain J: L.53, A.56, L.57, A.60, F.64 Ligands: E21.2, E21.8 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain J Hydrophobic interactions: A:I.52, A:F.55, A:E.59, A:A.60, A:L.63, A:L.63, J:L.53, J:A.56, J:A.60, J:F.64, J:F.64 E21.2: 13 residues within 4Å: Chain A: A.56, L.57, A.60, F.64 Chain B: I.52, F.55, A.56, E.59, A.60, G.62, L.63 Ligands: E21.1, E21.3 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:A.56, A:L.57, A:A.60, A:F.64, A:F.64, B:I.52, B:A.60, B:L.63, B:L.63 E21.3: 11 residues within 4Å: Chain B: L.53, A.56, L.57, A.60, F.64 Chain C: I.52, F.55, A.56, E.59, L.63 Ligands: E21.2 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:I.52, C:E.59, C:L.63, C:L.63, C:L.63, B:L.53, B:A.56, B:F.64 E21.4: 13 residues within 4Å: Chain D: L.53, A.56, L.57, A.60, F.64 Chain E: L.19, I.52, F.55, A.56, E.59, L.63, L.66 Ligands: E21.5 8 PLIP interactions: 3 interactions with chain D, 5 interactions with chain E Hydrophobic interactions: D:L.53, D:A.56, D:A.60, E:L.19, E:I.52, E:A.56, E:L.66 Hydrogen bonds: E:L.63 E21.5: 14 residues within 4Å: Chain E: L.53, A.56, L.57, A.60, F.64 Chain F: I.52, F.55, A.56, E.59, A.60, G.62, L.63 Ligands: E21.4, E21.6 11 PLIP interactions: 6 interactions with chain F, 5 interactions with chain E Hydrophobic interactions: F:I.52, F:F.55, F:E.59, F:A.60, F:L.63, F:L.63, E:L.53, E:A.56, E:A.60, E:F.64, E:F.64 E21.6: 13 residues within 4Å: Chain F: A.56, L.57, A.60, F.64 Chain G: I.52, F.55, A.56, E.59, A.60, G.62, L.63 Ligands: E21.5, E21.7 9 PLIP interactions: 4 interactions with chain G, 5 interactions with chain F Hydrophobic interactions: G:I.52, G:A.60, G:L.63, G:L.63, F:A.56, F:L.57, F:A.60, F:F.64, F:F.64 E21.7: 11 residues within 4Å: Chain G: L.53, A.56, L.57, A.60, F.64 Chain H: I.52, F.55, A.56, E.59, L.63 Ligands: E21.6 8 PLIP interactions: 5 interactions with chain H, 3 interactions with chain G Hydrophobic interactions: H:I.52, H:E.59, H:L.63, H:L.63, H:L.63, G:L.53, G:A.56, G:F.64 E21.8: 13 residues within 4Å: Chain I: L.53, A.56, L.57, A.60, F.64 Chain J: L.19, I.52, F.55, A.56, E.59, L.63, L.66 Ligands: E21.1 8 PLIP interactions: 3 interactions with chain I, 5 interactions with chain J Hydrophobic interactions: I:L.53, I:A.56, I:A.60, J:L.19, J:I.52, J:A.56, J:L.66 Hydrogen bonds: J:L.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, D.M., Structure of the yeast F1FO ATPase C10 ring with 21-hydroxy-oligomycin. To be Published

Release Date

2015-08-26

Peptides

ATP synthase subunit 9, mitochondrial: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
K

B
L

C
M

D
N

E
O

F
K

G
L

H
M

I
N

J
O

Membrane

We predict this structure to be a membrane protein.
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ATP synthase subunit 9, mitochondrial

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